TRANSFAC products
Interface
Data access / download
Data core content from TRANSFAC® (TFBSs, PWMs, etc.) and accompanying databases
PWMs
Tools / Functionality
Input data type
Analysis size
TRANSFAC® online
Web interface (GUI)
Export of subsets of certain data types and analysis results
Data core content. Plus, for TFs, additional data from HumanPSD (GO, tissue expression)
No download for PWMs. PWMs can only be used with the included tools
Web-based tools for TFBS prediction in single promoters or in gene/sequence sets (plus additional tools
DNA sequences, gene lists, genomic intervals
Limited to pre-processed data sets (of few hundred genes / seqs / intervals)
econom
TRANSFAC® online +
geneXplain®
platform
GUI and API
Export of subsets of certain data types and analysis results
Data core content. Plus, for TFs, additional data from HumanPSD (GO, tissue expression)
No download for PWMs. PWMs can only be used with the included tools
Tools and customizable workflows for omics data analysis (optionally extendable to pathway and upstream analysis)
Processed and raw RNAseq, SNPs, omics data, etc.
Complete analysis of omics data or of whole genomes
TRANSFAC® flat file download
Command line
Download of flat files with all data (DAT/JSON) for direct access
Data core content
Download of PWMs in matrix.dat for use with internal or external tools
Command line tools for TFBS prediction (Match Library) or use of PWMs with (compatible) tools of the user
DNA sequences
Whole genome analysis
You can view TRANSFAC online features and packages detailed info here >>>
