TRANSFAC products


Interface

Data access / download

Data core content from TRANSFAC® (TFBSs, PWMs, etc.) and accompanying databases

PWMs

Tools / Functionality

Input data type

Analysis size




TRANSFAC® online

Web interface (GUI)

Export of subsets of certain data types and analysis results

Data core content. Plus, for TFs, additional data from HumanPSD (GO, tissue expression)

No download for PWMs. PWMs can only be used with the included tools

Web-based tools for TFBS prediction in single promoters or in gene/sequence sets (plus additional tools

DNA sequences, gene lists, genomic intervals

Limited to pre-processed data sets (of few hundred genes / seqs / intervals)

econom

TRANSFAC® online +

geneXplain®

platform

GUI and API

Export of subsets of certain data types and analysis results

Data core content. Plus, for TFs, additional data from HumanPSD (GO, tissue expression)

No download for PWMs. PWMs can only be used with the included tools

Tools and customizable workflows for omics data analysis (optionally extendable to pathway and upstream analysis)

Processed and raw RNAseq, SNPs, omics data, etc.

Complete analysis of omics data or of whole genomes


TRANSFAC® flat file download

Command line

Download of flat files with all data (DAT/JSON) for direct access

Data core content

Download of PWMs in matrix.dat for use with internal or external tools

Command line tools for TFBS prediction (Match Library) or use of PWMs with (compatible) tools of the user

DNA sequences

Whole genome analysis

 

You can view TRANSFAC online features and packages detailed info here >>>

Explore TRANSFAC online features and packages info

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