Species covered by TRANSFAC
|
SPECIES |
Promoters (TRANSFAC download) |
Promoters (TRANSFAC omics, in TRANSFAC online) |
Genome (TRANSFAC omics, in TRANSFAC online) |
Genome (TRANSFAC omics, in geneXplain platform) |
PWMs (TRANSFAC omics and TRANSFAC download) |
MATCH Suite analysis (TRANSFAC omics) using Tissue-expression data (from Human Protein Atlas) |
|
Human (Homo sapiens) |
+1) |
+ |
+ hg38/GRCh38 |
+ |
Vertebrate (V$) |
+ |
|
Mouse (Mus musculus) |
+1) |
+ |
+ mm39/GRCm39 |
+ |
Vertebrate (V$) |
|
|
Rat (Rattus norvegicus) |
+1) |
+ |
+ m6/RGSC 6.0 |
+ |
Vertebrate (V$) |
|
|
Rhesus macaque (Macaca mulatta) |
+1) |
+ |
+ Mmul8.0.1 |
Vertebrate (V$) |
||
|
Chimp (Pan troglodytes) |
+2) |
(+) |
Vertebrate (V$) |
|||
|
Pig (Sus scrofa) |
+1) |
+ |
+ Sscrofa11.1 |
Vertebrate (V$) |
||
|
Dog (Canis familiaris) |
+2) |
(+) |
Vertebrate (V$) |
|||
|
Zebrafish (Danio rerio) |
+ |
Vertebrate (V$) |
||||
|
Other vertebrates |
Vertebrate (V$) |
|||||
|
Fruit fly (Drosophila melanogaster) |
+1) |
+ |
+ BDGP6 |
+ |
Insect (I$) |
|
|
Nematode (Caenorhabditis elegans) |
+ |
Nematode (N$) |
||||
|
Thale cress (Arabidopsis thaliana) |
+1) |
+ |
+ TAIR10 |
+ |
Plant (P$) |
|
|
Soybean (Glycine max) |
+2) |
+ |
Plant (P$) |
|||
|
Rice (Oryza sativa) |
+2) |
+ |
Plant (P$) |
|||
|
Other plants |
Plant (P$) |
|||||
|
Baker’s yeast (Saccharomyces cerevisiae) |
+ |
Fungus (F$) |
||||
|
Fission yeast (Schizosaccharomyces pombe) |
+ |
Fungus (F$) |
||||
|
Plasmodium falciparum |
+2) |
(+) |
||||
|
Upload of further genomes |
+ |
1) TRANSPro archive TRP_2023.2_data.tar.gz includes human, mouse, rat, pig, Arabidopsis, Rhesus macaque, and Drosophila melanogaster promoters in .dat and .gtf file format.
2) TRANSPro archive TRP_2010.3_data.tar.gz includes rice, soybean, dog, chimpanzee and plasmodium promoters in .dat format.
