TRANSFAC features and packages

Explore the functionality behind the available TRANSFAC packages


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Select your TRANSFAC

online license

Biggest collection of transcription factors, their DNA binding models, and genes bound by them, in

user-friendly interface

Prediction of TFBS in eukaryotic species, with a focus on human, mouse, rat, yeast, and plants,

using portal interface

Prediction of human TFBS using classic Match and MATCH Suite tools

Advanced tools for prediction of TFBS and their combinations on genomic scale using Machine Learning and AI methods

Over 200 pipelines and tools for bioinformatics analysis and modeling of NGS, RNA-seq, epigenomics, proteomics, and metabolomics data

Application Programming Interface (API) including Java-based API, R-based API, Jupiter notebook

Signal transduction and metabolic pathways, individual reactions with experimental details, protein-protein interactions (PPIs) and post-translational modifications (PTMs)

Integrated pathway visualization and modification tool

Gene-Disease-Drug-Clinical Trial assignments, disease biomarkers, drug targets, drug-disease approval status, functional classification tools

Upstream Analysis – integrated promoter and pathway analysis for identification of prospective drug targets and biomarkers

Disease molecular mechanism reconstruction and identification of prospective drug targets and treatments using a fully automatized pipeline for multi-omics data processing


TRANSFAC 



TRANSFAC 2.0 including

MATCH Suite


TRANSFAC with  geneXplain platform


TRANSFAC 2.0  including

MATCH Suite, and the  geneXplain platform


All databases with geneXplain platform


TRANSFAC 2.0  including

MATCH Suite, and HumanPSD + TRANSPATH, and the geneXplain platform


Full package

TRANSFAC 2.0 including

MATCH Suite, and HumanPSD + TRANSPATH, and the geneXplain platform, and Genome Enhancer

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