Key features

Integrated AI and ML tools for TFBS prediction
The platform provides access to advanced tools for prediction of genomic transcription factor (TF) binding sites and composite regulatory regions using such algorithms of Machine Learning (ML) and Artificial Intelligence (AI) as Genetic Algorithms and Sparse Logistic Regression.
Integrated databases and analysis tools
The platform provides an integrated view on several databases and analysis tools, public domain as well as commercial ones. They can be combined in a highly flexible way to design customized analyses.
Ready-made workflows for an easy start
A rapidly growing number of proven workflows facilitates a quick and easy access to the platform and its complex analysis functions. Input forms are simple and user-friendly. Workflows can be easily customized to specific needs. Experienced users can create their own workflows.
Fully integrated upstream analysis
The platform provides a fully integrated upstream analysis, which combines state-of-the-art analysis of regulatory genome regions with sophisticated pathway analyses.
Knowledge-based data analysis
The platform uses a number of renowned high-quality databases for the data analysis. TRANSFAC® and TRANSPATH® are expert-curated databases. GeneWays is generated by an NLP-based text-mining approach, providing a helpful complement for manually curated data. Well-known public-domain databases like Reactome and HumanCyc are integrated and applied as well.
JavaScript and R scripts
User-specific scripts in JavaScript and in R can be added directly into the platform, and immediately executed. They can be combined with pre-existing analyses, and can be part of the workflows.
NGS data analysis
NGS data analysis is supported by the platform. ChIP-seq data sets containing in vivo transcription factor binding sites or methylation results can be analyzed with the help of ready-made workflows. Galaxy tools are integrated, supporting RNA-seq data analysis, and many functions more.
Simulation engine inside
The platform contains a simulation engine that executes differential equation systems and visualizes the results. Parameter optimization, parameter fitting (based on expression data), and hierarchical modeling are supported.
Group project work including chat function
Share your data and results with other members of the project. Discuss what you are doing while working together on a dataset.

 

In addition to that, all our customers enjoy the following advantages or our products:

–       Technical and scientific support or your research: rapid answers to your questions from our professional support team will be always provided

–       Secure cloud space connected with online licenses that can be accessed from any location

–       Extensive manuals, documentation, examples, and tutorials available for all our products

–       Frequent releases and updates of our databases contents and software functionality

–       Ability to request personal training sessions

–       All our servers are running on CO2-neutral water or wind power

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