TRANSFAC profiles

Profile Number of PWMs TRANSFAC® geneXplain platform Recommended use cases
adipocyte_specific 347 X X Analysis of  low, moderate and high affinity binding sites for PWMs of transcription factors regulating adipocyte-specific genes
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
all_human_p0.001 10248 X Analysis of high affinity binding sites for all PWMs in sequences with nucleotide composition like human regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
all_human_p0.001_non3d 8183 X Analysis of high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like human regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
all_human_p0.01 10297 X Analysis of moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like human regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
all_human_p0.01_non3d 8230 X Analysis of moderate and high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like human regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
all_human_p0.05 10297 X Analysis of  low, moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like human regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
all_human_p0.05_non3d 8230 X Analysis of  low, moderate and high affinity binding sites for all PWMs derived from sequence datain sequences with nucleotide composition like human regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
all_mouse_p0.001 10252 X Analysis of high affinity binding sites for all PWMs in sequences with nucleotide composition like mouse regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
all_mouse_p0.001_non3d 8187 X Analysis of high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like mouse regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
all_mouse_p0.01 10297 X Analysis of moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like mouse regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
all_mouse_p0.01_non3d 8230 X Analysis of moderate and high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like mouse regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
all_mouse_p0.05 10297 X Analysis of  low, moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like mouse regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
all_mouse_p0.05_non3d 8230 X Analysis of  low, moderate and high affinity binding sites for all PWMs derived from sequence datain sequences with nucleotide composition like mouse regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
all_rat_p0.001 10255 X Analysis of high affinity binding sites for all PWMs in sequences with nucleotide composition like rat regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
all_rat_p0.001_non3d 8190 X Analysis of high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like rat regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
all_rat_p0.01 10297 X Analysis of moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like rat regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
all_rat_p0.01_non3d 8230 X Analysis of moderate and high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like rat regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
all_rat_p0.05 10297 X Analysis of  low, moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like rat regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
all_rat_p0.05_non3d 8230 X Analysis of  low, moderate and high affinity binding sites for all PWMs derived from sequence datain sequences with nucleotide composition like rat regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
all_thale_p0.001 10238 X Analysis of high affinity binding sites for all PWMs in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
all_thale_p0.001_non3d 8173 X Analysis of high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
all_thale_p0.01 10297 X Analysis of moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
all_thale_p0.01_non3d 8230 X Analysis of moderate and high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
all_thale_p0.05 10297 X Analysis of  low, moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
all_thale_p0.05_non3d 8230 X Analysis of  low, moderate and high affinity binding sites for all PWMs derived from sequence datain sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
bacteria 2 X X Analysis of  low, moderate and high affinity binding sites for bacterial transcription factor PWMs
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
Small scale predictions of binding sites for manual interpretation
cell_cycle_specific 320 X X Analysis of  low, moderate and high affinity binding sites for PWMs of transcription factors regulating cell cycle stage-specific genes
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
fungi 367 X X Analysis of  low, moderate and high affinity binding sites for fungal transcription factor PWMs
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
fungi_recommended_specific 204 X X Analysis of  low, moderate and high affinity binding sites for the recommended PWM of each fungal transcription factor
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
immune_cell_specific 672 X X Analysis of  low, moderate and high affinity binding sites for PWMs of transcription factors regulating immune cell-specific genes
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
insect_recommended_specific 299 X X Analysis of  low, moderate and high affinity binding sites for the recommended PWM of each insect transcription factor
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
insects 570 X X Analysis of  low, moderate and high affinity binding sites for insect transcription factor PWMs
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
invertebrates 634 X X Analysis of  low, moderate and high affinity binding sites for invertebrate transcription factorPWMs
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
liver_specific 574 X X Analysis of  low, moderate and high affinity binding sites for PWMs of transcription factors regulating liver-specific genes
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
lung_specific 423 X X Analysis of  low, moderate and high affinity binding sites for PWMs of transcription factors regulating lung-specific genes
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
methylation_vertebrate_representative 167 X X Analysis of  low, moderate and high affinity binding sites for PWMs of transcription factors preferring CpG-methylated sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
minFN 10263 X X Analysis of  low, moderate and high affinity binding sites for all PWMs
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
minFP 10263 X X Analysis of high affinity binding sites for all PWMs
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
minSUM 10263 X X Analysis of moderate and high affinity binding sites for all PWMs
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
models_CE 14 X X Analysis of  low, moderate and high affinity binding sites for PWMs to be used as a basis for CMSearch
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
Small scale predictions of binding sites for manual interpretation
models_RARE 1 X X Analysis of  low, moderate and high affinity binding sites for CMSearch-based prediction of retinoic acid response elements and similar sites
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
Small scale predictions of binding sites for manual interpretation
muscle_specific 230 X X Analysis of  low, moderate and high affinity binding sites for PWMs of transcription factors regulating muscle-specific genes
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
nematodes 64 X X Analysis of  low, moderate and high affinity binding sites for nematode transcription factor PWMs
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
nerve_system_specific 913 X X Analysis of  low, moderate and high affinity binding sites for PWMs of transcription factors regulating nerve system-specific genes
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
pancreatic_beta_cell_specific 348 X X Analysis of  low, moderate and high affinity binding sites for PWMs of transcription factors regulating pancreatic beta cell-specific genes
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
pituitary_specific 263 X X Analysis of  low, moderate and high affinity binding sites for PWMs of transcription factors regulating pituitary-specific genes
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
plant_recommended_specific 1022 X X Analysis of  low, moderate and high affinity binding sites for the recommended PWM of each plant transcription factor
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
plant_thale_p0.001 1365 X Analysis of high affinity binding sites for plant transcription factor PWMs in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
plant_thale_p0.001_non3d 994 X Analysis of high affinity binding sites for plant transcription factor PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
plant_thale_p0.01 1374 X Analysis of moderate and high affinity binding sites for plant transcription factor PWMs in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
plant_thale_p0.01_non3d 1001 X Analysis of moderate and high affinity binding sites for plant transcription factor PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
plant_thale_p0.05 1374 X Analysis of  low, moderate and high affinity binding sites for plant transcription factor PWMs in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
plant_thale_p0.05_non3d 1001 X Analysis of  low, moderate and high affinity binding sites for plant transcription factor PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
plants 1373 X X Analysis of  low, moderate and high affinity binding sites for plant transcription factor PWMs
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
redox_specific 188 X X Analysis of  low, moderate and high affinity binding sites for PWMs of transcription factors regulating redox-sensitive genes
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
vertebrate_human_p0.001 7887 X Analysis of high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like human regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
vertebrate_human_p0.001_non3d 6193 X Analysis of high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like human regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
vertebrate_human_p0.01 7912 X Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like human regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
vertebrate_human_p0.01_non3d 6218 X Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like human regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
vertebrate_human_p0.05 7912 X Analysis of  low, moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like human regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
vertebrate_human_p0.05_non3d 6218 X Analysis of  low, moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like human regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
vertebrate_mouse_p0.001 7890 X Analysis of high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like mouse regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
vertebrate_mouse_p0.001_non3d 6196 X Analysis of high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like mouse regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
vertebrate_mouse_p0.01 7912 X Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like mouse regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
vertebrate_mouse_p0.01_non3d 6218 X Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like mouse regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
vertebrate_mouse_p0.05 7912 X Analysis of  low, moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like mouse regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
vertebrate_mouse_p0.05_non3d 6218 X Analysis of  low, moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like mouse regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
vertebrate_non_redundant 164 X X Analysis of  low, moderate and high affinity binding sites for a non-redundant set of vertebrate transcription factor PWM specificities
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
vertebrate_non_redundant_minFN 164 X X Analysis of  low, moderate and high affinity binding sites for a non-redundant set of vertebrate transcription factor PWM specificities
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
vertebrate_non_redundant_minFP 164 X X Analysis of  high affinity binding sites for a non-redundant set of vertebrate transcription factor PWM specificities
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to high affinity binding sites
Large scale predictions of binding sites with high affinity for subsequent computional analysis
vertebrate_non_redundant_minSUM 164 X X Analysis of  moderate and high affinity binding sites for a non-redundant set of vertebrate transcription factor PWM specificities
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
vertebrate_rat_p0.001 7893 X Analysis of high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like rat regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
vertebrate_rat_p0.001_non3d 6199 X Analysis of high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like rat regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
vertebrate_rat_p0.01 7912 X Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like rat regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
vertebrate_rat_p0.01_non3d 6218 X Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like rat regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
vertebrate_rat_p0.05 7912 X Analysis of  low, moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like rat regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
vertebrate_rat_p0.05_non3d 6218 X Analysis of  low, moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like rat regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
vertebrate_recommended_specific 1584 X X Analysis of  low, moderate and high affinity binding sites for the recommended PWM of each vertebrate transcription factor
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
vertebrate_thale_p0.001 7874 X Analysis of high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
vertebrate_thale_p0.001_non3d 6180 X Analysis of high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to
high affinity binding sites
Large scale predictions of high affinity binding sites for subsequent computional analysis
vertebrate_thale_p0.01 7912 X Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
vertebrate_thale_p0.01_non3d 6218 X Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites
Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis
vertebrate_thale_p0.05 7912 X Analysis of  low, moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
vertebrate_thale_p0.05_non3d 6218 X Analysis of  low, moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
vertebrates 7881 X X Analysis of  low, moderate and high affinity binding sites for vertebrate transcription factor PWMs
– Discovery of enriched motifs in sets of co-regulated sequences
– Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites
Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis
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