TRANSFAC profiles
Profile | Number of PWMs | TRANSFAC® | geneXplain platform | Recommended use cases |
adipocyte_specific | 347 | X | X | Analysis of low, moderate and high affinity binding sites for PWMs of transcription factors regulating adipocyte-specific genes – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
all_human_p0.001 | 10248 | X | Analysis of high affinity binding sites for all PWMs in sequences with nucleotide composition like human regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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all_human_p0.001_non3d | 8183 | X | Analysis of high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like human regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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all_human_p0.01 | 10297 | X | Analysis of moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like human regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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all_human_p0.01_non3d | 8230 | X | Analysis of moderate and high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like human regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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all_human_p0.05 | 10297 | X | Analysis of low, moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like human regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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all_human_p0.05_non3d | 8230 | X | Analysis of low, moderate and high affinity binding sites for all PWMs derived from sequence datain sequences with nucleotide composition like human regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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all_mouse_p0.001 | 10252 | X | Analysis of high affinity binding sites for all PWMs in sequences with nucleotide composition like mouse regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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all_mouse_p0.001_non3d | 8187 | X | Analysis of high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like mouse regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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all_mouse_p0.01 | 10297 | X | Analysis of moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like mouse regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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all_mouse_p0.01_non3d | 8230 | X | Analysis of moderate and high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like mouse regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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all_mouse_p0.05 | 10297 | X | Analysis of low, moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like mouse regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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all_mouse_p0.05_non3d | 8230 | X | Analysis of low, moderate and high affinity binding sites for all PWMs derived from sequence datain sequences with nucleotide composition like mouse regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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all_rat_p0.001 | 10255 | X | Analysis of high affinity binding sites for all PWMs in sequences with nucleotide composition like rat regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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all_rat_p0.001_non3d | 8190 | X | Analysis of high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like rat regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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all_rat_p0.01 | 10297 | X | Analysis of moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like rat regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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all_rat_p0.01_non3d | 8230 | X | Analysis of moderate and high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like rat regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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all_rat_p0.05 | 10297 | X | Analysis of low, moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like rat regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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all_rat_p0.05_non3d | 8230 | X | Analysis of low, moderate and high affinity binding sites for all PWMs derived from sequence datain sequences with nucleotide composition like rat regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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all_thale_p0.001 | 10238 | X | Analysis of high affinity binding sites for all PWMs in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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all_thale_p0.001_non3d | 8173 | X | Analysis of high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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all_thale_p0.01 | 10297 | X | Analysis of moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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all_thale_p0.01_non3d | 8230 | X | Analysis of moderate and high affinity binding sites for all PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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all_thale_p0.05 | 10297 | X | Analysis of low, moderate and high affinity binding sites for all PWMs in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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all_thale_p0.05_non3d | 8230 | X | Analysis of low, moderate and high affinity binding sites for all PWMs derived from sequence datain sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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bacteria | 2 | X | X | Analysis of low, moderate and high affinity binding sites for bacterial transcription factor PWMs – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis – Small scale predictions of binding sites for manual interpretation |
cell_cycle_specific | 320 | X | X | Analysis of low, moderate and high affinity binding sites for PWMs of transcription factors regulating cell cycle stage-specific genes – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
fungi | 367 | X | X | Analysis of low, moderate and high affinity binding sites for fungal transcription factor PWMs – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
fungi_recommended_specific | 204 | X | X | Analysis of low, moderate and high affinity binding sites for the recommended PWM of each fungal transcription factor – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
immune_cell_specific | 672 | X | X | Analysis of low, moderate and high affinity binding sites for PWMs of transcription factors regulating immune cell-specific genes – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
insect_recommended_specific | 299 | X | X | Analysis of low, moderate and high affinity binding sites for the recommended PWM of each insect transcription factor – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
insects | 570 | X | X | Analysis of low, moderate and high affinity binding sites for insect transcription factor PWMs – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
invertebrates | 634 | X | X | Analysis of low, moderate and high affinity binding sites for invertebrate transcription factorPWMs – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
liver_specific | 574 | X | X | Analysis of low, moderate and high affinity binding sites for PWMs of transcription factors regulating liver-specific genes – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
lung_specific | 423 | X | X | Analysis of low, moderate and high affinity binding sites for PWMs of transcription factors regulating lung-specific genes – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
methylation_vertebrate_representative | 167 | X | X | Analysis of low, moderate and high affinity binding sites for PWMs of transcription factors preferring CpG-methylated sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
minFN | 10263 | X | X | Analysis of low, moderate and high affinity binding sites for all PWMs – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
minFP | 10263 | X | X | Analysis of high affinity binding sites for all PWMs – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
minSUM | 10263 | X | X | Analysis of moderate and high affinity binding sites for all PWMs – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
models_CE | 14 | X | X | Analysis of low, moderate and high affinity binding sites for PWMs to be used as a basis for CMSearch – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis – Small scale predictions of binding sites for manual interpretation |
models_RARE | 1 | X | X | Analysis of low, moderate and high affinity binding sites for CMSearch-based prediction of retinoic acid response elements and similar sites – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis – Small scale predictions of binding sites for manual interpretation |
muscle_specific | 230 | X | X | Analysis of low, moderate and high affinity binding sites for PWMs of transcription factors regulating muscle-specific genes – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
nematodes | 64 | X | X | Analysis of low, moderate and high affinity binding sites for nematode transcription factor PWMs – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
nerve_system_specific | 913 | X | X | Analysis of low, moderate and high affinity binding sites for PWMs of transcription factors regulating nerve system-specific genes – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
pancreatic_beta_cell_specific | 348 | X | X | Analysis of low, moderate and high affinity binding sites for PWMs of transcription factors regulating pancreatic beta cell-specific genes – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
pituitary_specific | 263 | X | X | Analysis of low, moderate and high affinity binding sites for PWMs of transcription factors regulating pituitary-specific genes – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
plant_recommended_specific | 1022 | X | X | Analysis of low, moderate and high affinity binding sites for the recommended PWM of each plant transcription factor – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
plant_thale_p0.001 | 1365 | X | Analysis of high affinity binding sites for plant transcription factor PWMs in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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plant_thale_p0.001_non3d | 994 | X | Analysis of high affinity binding sites for plant transcription factor PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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plant_thale_p0.01 | 1374 | X | Analysis of moderate and high affinity binding sites for plant transcription factor PWMs in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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plant_thale_p0.01_non3d | 1001 | X | Analysis of moderate and high affinity binding sites for plant transcription factor PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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plant_thale_p0.05 | 1374 | X | Analysis of low, moderate and high affinity binding sites for plant transcription factor PWMs in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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plant_thale_p0.05_non3d | 1001 | X | Analysis of low, moderate and high affinity binding sites for plant transcription factor PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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plants | 1373 | X | X | Analysis of low, moderate and high affinity binding sites for plant transcription factor PWMs – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
redox_specific | 188 | X | X | Analysis of low, moderate and high affinity binding sites for PWMs of transcription factors regulating redox-sensitive genes – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
vertebrate_human_p0.001 | 7887 | X | Analysis of high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like human regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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vertebrate_human_p0.001_non3d | 6193 | X | Analysis of high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like human regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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vertebrate_human_p0.01 | 7912 | X | Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like human regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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vertebrate_human_p0.01_non3d | 6218 | X | Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like human regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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vertebrate_human_p0.05 | 7912 | X | Analysis of low, moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like human regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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vertebrate_human_p0.05_non3d | 6218 | X | Analysis of low, moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like human regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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vertebrate_mouse_p0.001 | 7890 | X | Analysis of high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like mouse regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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vertebrate_mouse_p0.001_non3d | 6196 | X | Analysis of high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like mouse regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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vertebrate_mouse_p0.01 | 7912 | X | Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like mouse regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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vertebrate_mouse_p0.01_non3d | 6218 | X | Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like mouse regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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vertebrate_mouse_p0.05 | 7912 | X | Analysis of low, moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like mouse regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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vertebrate_mouse_p0.05_non3d | 6218 | X | Analysis of low, moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like mouse regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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vertebrate_non_redundant | 164 | X | X | Analysis of low, moderate and high affinity binding sites for a non-redundant set of vertebrate transcription factor PWM specificities – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
vertebrate_non_redundant_minFN | 164 | X | X | Analysis of low, moderate and high affinity binding sites for a non-redundant set of vertebrate transcription factor PWM specificities – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
vertebrate_non_redundant_minFP | 164 | X | X | Analysis of high affinity binding sites for a non-redundant set of vertebrate transcription factor PWM specificities – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of binding sites with high affinity for subsequent computional analysis |
vertebrate_non_redundant_minSUM | 164 | X | X | Analysis of moderate and high affinity binding sites for a non-redundant set of vertebrate transcription factor PWM specificities – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
vertebrate_rat_p0.001 | 7893 | X | Analysis of high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like rat regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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vertebrate_rat_p0.001_non3d | 6199 | X | Analysis of high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like rat regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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vertebrate_rat_p0.01 | 7912 | X | Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like rat regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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vertebrate_rat_p0.01_non3d | 6218 | X | Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like rat regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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vertebrate_rat_p0.05 | 7912 | X | Analysis of low, moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like rat regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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vertebrate_rat_p0.05_non3d | 6218 | X | Analysis of low, moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like rat regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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vertebrate_recommended_specific | 1584 | X | X | Analysis of low, moderate and high affinity binding sites for the recommended PWM of each vertebrate transcription factor – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
vertebrate_thale_p0.001 | 7874 | X | Analysis of high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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vertebrate_thale_p0.001_non3d | 6180 | X | Analysis of high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to high affinity binding sites – Large scale predictions of high affinity binding sites for subsequent computional analysis |
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vertebrate_thale_p0.01 | 7912 | X | Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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vertebrate_thale_p0.01_non3d | 6218 | X | Analysis of moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to moderate and high affinity binding sites – Large scale predictions of binding sites with moderate or high affinity for subsequent computional analysis |
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vertebrate_thale_p0.05 | 7912 | X | Analysis of low, moderate and high affinity binding sites for vertebrate transcription factor PWMs in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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vertebrate_thale_p0.05_non3d | 6218 | X | Analysis of low, moderate and high affinity binding sites for vertebrate transcription factor PWMs derived from sequence data in sequences with nucleotide composition like thale cress regulatory sequences – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |
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vertebrates | 7881 | X | X | Analysis of low, moderate and high affinity binding sites for vertebrate transcription factor PWMs – Discovery of enriched motifs in sets of co-regulated sequences – Searching for composite modules with possible combinations restricted to low, moderate and high affinity binding sites – Large scale predictions of binding sites with low, moderate or high affinity for subsequent computional analysis |