Selection of publications authored by the geneXplain team:
Kolpakov, F., Akberdin, I., Kiselev, I., Kolmykov, S., Kondrakhin, Y., Kulyashov, M., Kutumova, E., Pintus, S., Ryabova, A., Sharipov, R., Yevshin, I., Zhatchenko, S., & Kel, A. (2022). BioUML-towards a universal research platform. Nucleic Acids Res. 50(W1),W124–31. Link
Orekhov A.N., Sukhorukov V.N., Nikiforov N.G., Kubekina M.V., Sobenin I.A., Foxx K.K., Pintus S., Stegmaier P., Stelmashenko D., Kel A., Poznyak A.V., Wu W.K., Kasianov A.S., Makeev V.Y., Manabe I., Oishi Y. (2020) Signaling Pathways Potentially Responsible for Foam Cell Formation: Cholesterol Accumulation or Inflammatory Response-What is First? Int J Mol Sci. 21(8),2716. Link
Kel A., Boyarskikh U., Stegmaier P., Leskov L.S., Sokolov A.V., Yevshin I., Mandrik N., Stelmashenko D., Koschmann J., Kel-Margoulis O., Krull M., Martínez-Cardús A., Moran S., Esteller M., Kolpakov F., Filipenko M., Wingender E. (2019) Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer. BMC Bioinformatics. 20(Suppl 4),119. Link
Boyarskikh, U., Pintus, S., Mandrik, N., Stelmashenko, D., Kiselev, I., Evshin, I., Sharipov, R., Stegmaier, P., Kolpakov, F., Filipenko, M., Kel, A. (2018) Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3. BMC Med. Genomics11(Suppl 1), 12.Link
Kel, A.E., Stegmaier, P., Valeev, T., Koschmann, J., Poroikov, V., Kel-Margoulis, O.V. and Wingender, E. (2016) Multi-omics “upstream analysis” of regulatory genomic regions helps identifying targets against methotrexate resistance of colon cancer. EuPA Open Proteomics 13, 1-13. Link
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