Acceptable input data formats

Genome Enhancer works with genomics, transcriptomics, epigenomics, proteomics and metabolomics input data types of the following formats:

Transcriptomics (RNA-seq, microarrays)

*.txt, *.csv, *.xls (table with gene identifiers)

*.CEL (affymetrix)

*.txt (special agilent format)

*.txt (special illumina format)


Epigenomics (ChIP-seq)


*.bam (hg38 only)

*.bed (hg38 only)

*.txt (table with illumina methylation probe ids, cg*)



*.txt, *.csv, *.xls (table data with SNP identifiers, rs*), *.tsv



*.txt, *.csv, *.xls (table with protein identifiers)


*.txt, *.csv, *.xls (table with the list of metabolites from chebi database, e.g. CHEBI:57316)

Files of one data format can be uploaded in a .zip archive