ChromRare training

Let’s geneXplain your ChIP-seq data with love

Bioinformatics training held within the ChromRare project meeting

February 14th, 2024

Bioinformatics session

– 9.00 – 9.45 (JC Andrau): How to isolate and characterise enhancers using genome-wide approaches, introduction to practical bioinformatics approaches

– 9.45 – 10.30 (Alex Kel): practical options to isolate enhancers using ChIP-seq data sets and the geneXplain platform

– 10.30 – 10.45 Coffee break

– 10.45 – 11.30 (Alex Kel): Applying Genome Enhancer to identify TFBS composition of enhancers and to reconstruct master regulatory pathways.

– 11.30 – 12.00 general discussion with students

Topics to be covered within the hands-on training session:

– Loading ChIP-seq data and peak calling (MACS2)
– Revealing enhancers
– TRANSFAC motif enrichment
– Pathways and master-regulators

View and download the hands-on training materials

Fill in this form to receive the license key for activating your geneXplain ChromRare license:

Explore further info about the ChromRare project here.

Funded by the European Union. Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or European Research Executive Agency (REA). Neither the European Union nor the granting authority can be held responsible for them. Chrom_rare, GA No 101073334.