TRANSFAC

TRANSFAC 2.0

Discover TF binding sites in promoters and enhancers of your genes

Site search and enrichment automatic cut-off optimisation (Match, FMatch, CMsearch)
Tissue specific TF binding sites in promoters and enhancers
(MATCH-suite)
AI and ML reveal site combinatorics
Omics analysis RNA-seq, ChIP-seq, ATAC-seq, CUT&RUN, WGS, WES, single cell
Easy GUI for no-coding bioinformatics
Over 200 tools and pipelines Analyze genes, FASTA, FASTQ, VCF, BED.
Cloud Storage 100GB
API run our tools from your local Python and R

Reconstruct signal transduction network controlling your genes

Identify drug targets and disease biomarkers

Disease mechanism discovery with AI and upstream analysis for over 3,900 human diseases
Biomarkers over 140,000 (causal, correlative, MOA) and over 2,000,000 annotations
Drugs and targets over 10,000 drugs and over 55,000 targets
Clinical trials over 1,100,000 trial-disease pairs

Multi-omics integration “All Five”: transcriptomics, genomics, epigenomics, proteomics, metabolomics
Drug repurposing using networks and chemoinformatics
Fully automatic one-click solution
Detailed report with everything needed for your paper

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