Classification of Human Transcription Factors
- Subfamilies -
October 05, 2018
 
Display detail:  All levels |  Superclasses |  Classes |  Families |  Subfamilies |  Genera
 
1 Superclass: Basic domains TRANSFAC class description  
  1.1 Class: Basic leucine zipper factors (bZIP) TRANSFAC class description Further information  
  1.1.1 Family: Jun-related factors TGAGTCA  
  1.1.1.1 Subfamily: Jun factors TGAGTCA  
  1.1.1.2 Subfamily: NF-E2-like factors GCTGAGTCA  
  1.1.1.3 Subfamily: ATF-2-like factors TGACGTCA  
  1.1.2 Family: Fos-related factors (TGAGTCA)  
  1.1.2.1 Subfamily: Fos factors (TGAGTCA)  
  1.1.2.2 Subfamily: ATF-3-like factors TGACGTCA  
  1.1.3 Family: Maf-related factors TGCTGACTCAGCA  
  1.1.3.1 Subfamily: Large Maf factors TGCTGACTCAGCA  
  1.1.3.2 Subfamily: Small Maf factors TGCTGACTCAGCA  
  1.1.4 Family: B-ATF-related factors TGAGTCA  
  1.1.5 Family: XBP-1-related factors GGATGACGTGTACA  
  1.1.6 Family: ATF-4-related factors TGACGTCA  
  1.1.7 Family: CREB-related factors TGACGTCA  
  1.1.7.1 Subfamily: CREB-like factors TGACGTCA  
  1.1.7.2 Subfamily: CREB-3-like factors TGACGTCA  
  1.1.7.3 Subfamily: ATF-6 factors TGACGTGG  
  1.1.7.4 Subfamily: CREBZF-like factors TGACGTCA  
  1.1.7.5 Subfamily: CREBL2-like factors TGACGTCA  
  1.1.8 Family: C/EBP-related ATTGCGCAAT  
  1.1.8.1 Subfamily: C/EBP ATTGCGCAAT  
  1.1.8.2 Subfamily: PAR factors TTATGCAA  
  1.1.8.3 Subfamily: CREBRF-like factors    
  1.1.0 Family: ZIP only    
  1.1.0.1 Subfamily: TSC22    
  1.1.0.2 Subfamily: UTF    
  1.2 Class: Basic helix-loop-helix factors (bHLH) TRANSFAC class description Further information  
  1.2.1 Family: E2A-related factors CAGGTG  
  1.2.2 Family: MyoD / ASC-related factors CAGGTG  
  1.2.2.1 Subfamily: Myogenic transcription factors    
  1.2.2.2 Subfamily: Achaete-Scute-like factors    
  1.2.3 Family: Tal-related factors CAGCTG  
  1.2.3.1 Subfamily: Tal / HEN-like factors CAGCTG  
  1.2.3.2 Subfamily: Twist-like factors CGTCTG  
  1.2.3.3 Subfamily: Mesp-like factors    
  1.2.3.4 Subfamily: Neurogenin / Atonal-like factors CAGCTG  
  1.2.3.5 Subfamily: bHLHa9-like factors    
  1.2.4 Family: Hairy-related factors CACGAG  
  1.2.4.1 Subfamily: Hairy-like factors CACGAG  
  1.2.5 Family: PAS domain factors CACGC  
  1.2.5.1 Subfamily: Ahr-like factors CACGC  
  1.2.5.2 Subfamily: Arnt-like factors CACGTG  
  1.2.5.3 Subfamily: NCoA factors      
  1.2.5.4 Subfamily: NPAS-4 CACGA  
  1.2.5.5 Subfamily: SOHLH-like factors    
  1.2.6 Family: bHLH-ZIP factors CACATG  
  1.2.6.1 Subfamily: TFE3-like factors CACATG  
  1.2.6.2 Subfamily: USF factors CACGTG  
  1.2.6.3 Subfamily: SREBP factors ATCACCCCAC  
  1.2.6.4 Subfamily: AP-4 CAGCTG  
  1.2.6.5 Subfamily: Myc / Max factors CACGTG  
  1.2.6.6 Subfamily: Mondo-like factors CACGTG  
  1.2.6.7 Subfamily: Mad1-like factors CACGTG  
  1.2.6.8 Subfamily: Mad5-like factors CACGTG  
  1.2.8 Family: HLH domain only    
  1.3 Class: Basic helix-span-helix factors (bHSH) TRANSFAC class description Further information  
  1.3.1 Family: AP-2 GCCTGAGGC  
2 Superclass: Zinc-coordinating DNA-binding domains TRANSFAC class description  
  2.1 Class: Nuclear receptors with C4 zinc fingers TRANSFAC class description Further information  
  2.1.1 Family: Steroid hormone receptors (NR3)    
  2.1.1.1 Subfamily: GR-like receptors (NR3C) AGAACATGATGTTCT  
  2.1.1.2 Subfamily: ER-like receptors (NR3A&B) AGGTCACAGTGACCT  
  2.1.2 Family: Thyroid hormone receptor-related factors (NR1)    
  2.1.2.1 Subfamily: Retinoic acid receptors (NR1B) TGACCTTTGACCT  
  2.1.2.2 Subfamily: Thyroid hormone receptors (NR1A) TGACCTGAAATGACCT  
  2.1.2.3 Subfamily: Rev-ErbA (NR1D) TGACCTAGTGACCT  
  2.1.2.4 Subfamily: Vitamin D receptor (NR1I) TGACCTTCGTGACCT  
  2.1.2.5 Subfamily: PPAR (NR1C) TGACCTTTGACCT  
  2.1.2.6 Subfamily: ROR (NR1F) TGACCTACTTAT  
  2.1.2.7 Subfamily: LXR (NR1H) TGACCTCTACTGACCT  
  2.1.3 Family: RXR-related receptors (NR2) (TGACCT)  
  2.1.3.1 Subfamily: Retinoid X receptors (NR2B) (TGACCT)  
  2.1.3.2 Subfamily: HNF-4 (NR2A) AGTCCAAAGTTCA  
  2.1.3.3 Subfamily: Tailless-like receptors (NR2E) TGACCTTTGACCT  
  2.1.3.4 Subfamily: Testicular receptors (NR2C) TGACCTCTGACCT  
  2.1.3.5 Subfamily: COUP-like receptors (NR2F) TGACCTTTGACCT  
  2.1.4 Family: NGFI-B-related receptors (NR4) TGACCTTT  
  2.1.5 Family: FTZ-F1-related receptors (NR5) TGACCTTG  
  2.1.6 Family: GCNF-related receptors (NR6) TGAACTTGACTTGA  
  2.1.7 Family: DAX-related receptors (NR0) TGACCTT  
  2.2 Class: Other C4 zinc finger-type factors TRANSFAC class description Further information  
  2.2.1 Family: GATA-type zinc fingers    
  2.2.1.1 Subfamily: Two zinc-finger GATA factors AGATAA  
  2.2.1.2 Subfamily: Single GATA-type zinc-finger AGATAA  
  2.3 Class: C2H2 zinc finger factors TRANSFAC class description Further information  
  2.3.1 Family: Three-zinc finger Krüppel-related factors    
  2.3.1.1 Subfamily: Sp1-like factors GGGGCGGGG  
  2.3.1.2 Subfamily: Krüppel-like factors CCACACCCT  
  2.3.1.3 Subfamily: EGR factors GCGTGGGCG  
  2.3.2 Family: Other factors with up to three adjacent zinc fingers    
  2.3.2.1 Subfamily: Factors with 2-3 adjacent zinc fingers
and a BTB/POZ domain		 TCCTGCTA  
  2.3.2.2 Subfamily: Factors with 2-3 adjacent zinc fingers
and a KRAB domain		    
  2.3.2.3 Subfamily: Factors with 2-3 adjacent zinc fingers
and a SCAN domain		    
  2.3.2.4 Subfamily: Other three adjacent zinc finger factors    
  2.3.3 Family: More than 3 adjacent zinc finger factors    
  2.3.3.1 Subfamily: GLI-like factors TGGGTGGTC  
  2.3.3.2 Subfamily: Snail-like factors CACCTG  
  2.3.3.3 Subfamily: ZFP91-like factors    
  2.3.3.4 Subfamily: ZNF280-like zinc finger factors    
  2.3.3.5 Subfamily: ZSCAN5-like zinc finger factors    
  2.3.3.6 Subfamily: ZNF75-like zinc finger factors    
  2.3.3.7 Subfamily: ZNF705 factors    
  2.3.3.8 Subfamily: ZBTB7 factors GACCCC  
  2.3.3.9 Subfamily: YY1-like factors GCCATCTTG  
  2.3.3.10 Subfamily: ZNF24-like factors TCAT  
  2.3.3.11 Subfamily: ZBTB6-like factors    
  2.3.3.12 Subfamily: PRDM1-like factors AAGTGAAAGT  
  2.3.3.13 Subfamily: ZNF148-like factors CACCC  
  2.3.3.14 Subfamily: ZBTB20-like factors    
  2.3.3.15 Subfamily: ZNF524-like factors    
  2.3.3.16 Subfamily: ZNF238-like factors AACATCTGGA  
  2.3.3.17 Subfamily: OVOL-factors GCGGGGG  
  2.3.3.18 Subfamily: ZNF56-like factors    
  2.3.3.19 Subfamily: ZNF500-like factors    
  2.3.3.20 Subfamily: FEZF factors    
  2.3.3.21 Subfamily: GFI1 factors AAATCACAGC  
  2.3.3.22 Subfamily: BCL6 factors CTTTCTAGGAAT  
  2.3.3.23 Subfamily: ZNF212-like factors    
  2.3.3.24 Subfamily: MTF1-like factors TGCACAC  
  2.3.3.25 Subfamily: PLAG factors    
  2.3.3.26 Subfamily: ZKSCAN3-like factors TGAGGGG  
  2.3.3.27 Subfamily: ZNF525-like factors    
  2.3.3.28 Subfamily: ZNF76-like factors CCCATCATGCCTTGC  
  2.3.3.29 Subfamily: ZNF652-like factors    
  2.3.3.30 Subfamily: ZNF350-like factors TGGgttCAGactTTG  
  2.3.3.31 Subfamily: ZNF642-like factors    
  2.3.3.32 Subfamily: ZNF679-like factors    
  2.3.3.33 Subfamily: ZNF763-like factors    
  2.3.3.34 Subfamily: ZNF3-like factors    
  2.3.3.35 Subfamily: ZNF620-like factors    
  2.3.3.36 Subfamily: ZNF324 factors    
  2.3.3.37 Subfamily: ZNF362-like factors    
  2.3.3.38 Subfamily: ZNF282-like factors TCCACCCC  
  2.3.3.39 Subfamily: ZNF764-like factors    
  2.3.3.40 Subfamily: ZNF177-like factors    
  2.3.3.41 Subfamily: ZNF32-like factors    
  2.3.3.42 Subfamily: ZNF773-like factors    
  2.3.3.43 Subfamily: ZNF558-like factors    
  2.3.3.44 Subfamily: ZNF302-like factors    
  2.3.3.45 Subfamily: ZNF562-like factors    
  2.3.3.46 Subfamily: ZXD-factors    
  2.3.3.47 Subfamily: ZNF222-like factors    
  2.3.3.48 Subfamily: ZNF736-like factors    
  2.3.3.49 Subfamily: ZNF286 factors    
  2.3.3.50 Subfamily: CTCF-like factors    
  2.3.3.51 Subfamily: ZNF366-like factors    
  2.3.3.52 Subfamily: ZNF322-like factors    
  2.3.3.53 Subfamily: ZNF548-like factors    
  2.3.3.54 Subfamily: ZNF460-like factors    
  2.3.3.55 Subfamily: ZNF146-like factors    
  2.3.3.56 Subfamily: ZNF214-like factors    
  2.3.3.57 Subfamily: ZNF479-like factors    
  2.3.3.58 Subfamily: ZNF180-like factors    
  2.3.3.59 Subfamily: ZNF100-like factors    
  2.3.3.60 Subfamily: ZNF98-like factors    
  2.3.3.61 Subfamily: ZNF343-like factors    
  2.3.3.62 Subfamily: ZFP2-like factors    
  2.3.3.63 Subfamily: ZFP30-like factors    
  2.3.3.64 Subfamily: ZNF354A-like factors    
  2.3.3.65 Subfamily: ZFX/ZFY factors AGGCCC  
  2.3.3.66 Subfamily: ZNF689-like factors    
  2.3.3.67 Subfamily: ZFN283-like factors    
  2.3.3.68 Subfamily: ZFN81-like factors    
  2.3.3.69 Subfamily: ZFN25-like factors    
  2.3.3.70 Subfamily: ZFN26-like factors    
  2.3.3.71 Subfamily: ZFN300-like factors    
  2.3.3.72 Subfamily: ZFN813-like factors    
  2.3.3.73 Subfamily: ZNF816A-like factors    
  2.3.3.74 Subfamily: ZNF442-like factors    
  2.3.3.75 Subfamily: ZNF432-like factors    
  2.3.3.76 Subfamily: ZNF665-like factors    
  2.3.3.77 Subfamily: ZNF595-like factors    
  2.3.3.78 Subfamily: ZNF14-like factors    
  2.3.3.79 Subfamily: ZNF841-like factors    
  2.3.3.80 Subfamily: ZNF99-like factors    
  2.3.3.81 Subfamily: ZNF12-like factors    
  2.3.3.0 Subfamily: unclassified    
  2.3.4 Family: Factors with multiple dispersed zinc fingers    
  2.3.4.1 Subfamily: ZNF417-like factors    
  2.3.4.2 Subfamily: ZNF219-like factors CCCCCA  
  2.3.4.3 Subfamily: Sal-like factors    
  2.3.4.4 Subfamily: Ikaros TTGGGAAT  
  2.3.4.5 Subfamily: HIV EP-factors GGGACTTTCC  
  2.3.4.6 Subfamily: ZBTB1-like factors    
  2.3.4.7 Subfamily: RLF-like factors    
  2.3.4.8 Subfamily: MAZ-like factors GGGGAGGG  
  2.3.4.9 Subfamily: ZNF532-like factors    
  2.3.4.10 Subfamily: ZNF512-factors    
  2.3.4.11 Subfamily: ZNF658-factors    
  2.3.4.12 Subfamily: ZNF423-like factors GCACCCAAGGGTGC  
  2.3.4.13 Subfamily: ZNF639-like factors    
  2.3.4.14 Subfamily: Evi-1-like factors ACAAGATAA  
  2.3.4.15 Subfamily: BCL11    
  2.3.4.16 Subfamily: Insulinoma-associated proteins    
  2.3.4.17 Subfamily: Hypermethylated in Cancer proteins GGGTGCCCGG  
  2.3.4.18 Subfamily: ZNF518    
  2.3.4.19 Subfamily: Basonuclin    
  2.3.4.20 Subfamily: TRERF1-like factors    
  2.3.4.21 Subfamily: HINFP-like factors CGGACGTT  
  2.3.4.22 Subfamily: ZNF526-like factors    
  2.3.4.23 Subfamily: ZNF319-like factors    
  2.3.4.24 Subfamily: ZNF134-like factors    
  2.3.4.25 Subfamily: ZNF37A-like factors    
  2.3.4.0 Subfamily: unclassified    
  2.3.5 Family: BED zinc finger factors TGTCGCGACA  
  2.4 Class: C6 zinc cluster factors TRANSFAC class description  
 
  2.5 Class: DM-type intertwined zinc finger factors Class description Further information  
  2.5.1 Family: DMRT TGATACATTGTTGC  
  2.6 Class: CXXC zinc finger factors Class description Further information  
  2.6.1 Family: CpG-binding proteins    
  2.7 Class: C2HC zinc finger factors Class description Further information  
  2.7.1 Family: Myelin transcription factor-related proteins AAGTT  
  2.7.2 Family: Friend of GATA proteins    
  2.7.3 Family: Histone acetyltransferases with C2HC zinc finger    
  2.7.4 Family: Lethal(3)malignant brain tumor-related proteins    
  2.7.5 Family: LYAR-related proteins    
  2.8 Class: C3H zinc finger factors Class description Further information  
  2.8.1 Family: ZC3H8-related factors    
  2.8.2 Family: ZGPAT-related factors    
  2.8.3 Family: RC3H-related factors    
  2.8.4 Family: CNOT4-related factors    
  2.9 Class: C2CH THAP-type zinc finger factors Class description Further information  
  2.9.1 Family: THAP-related factors TTGCCCGTACT  
3 Superclass: Helix-turn-helix domains TRANSFAC class description  
  3.1 Class: Homeo domain factors TRANSFAC class description Further information  
  3.1.1 Family: HOX-related factors    
  3.1.1.1 Subfamily: HOX1 TAATTA  
  3.1.1.2 Subfamily: HOX2 TAATTA  
  3.1.1.3 Subfamily: HOX3 TAATTA  
  3.1.1.4 Subfamily: HOX4 TTAATTAA  
  3.1.1.5 Subfamily: HOX5 TAATTA  
  3.1.1.6 Subfamily: HOX6-7 TAATTA  
  3.1.1.7 Subfamily: HOX8 GTAATTA  
  3.1.1.8 Subfamily: HOX9-13 TCGTAAA  
  3.1.1.9 Subfamily: CDX (Caudal type homeobox) GGTAATAAA  
  3.1.1.10 Subfamily: EVX (Even-skipped homolog) CTAATTAG  
  3.1.1.11 Subfamily: GBX (Gastrulation brain homeobox) CTAATTAG  
  3.1.1.12 Subfamily: GSX TAATTA  
  3.1.1.13 Subfamily: MNX ACTAATTA  
  3.1.1.14 Subfamily: MEOX TAATTA  
  3.1.1.15 Subfamily: PDX TAATTA  
  3.1.2 Family: NK-related factors    
  3.1.2.1 Subfamily: BARHL AACCAATTA  
  3.1.2.2 Subfamily: BARX TAATTA  
  3.1.2.3 Subfamily: BSX TAATTA  
  3.1.2.4 Subfamily: DBX TTAATTA  
  3.1.2.5 Subfamily: DLX TAATTA  
  3.1.2.6 Subfamily: EMX CTAATTAG  
  3.1.2.7 Subfamily: EN (Engrailed-like factors) CTAATTAG  
  3.1.2.8 Subfamily: HHEX ATTAA  
  3.1.2.9 Subfamily: HLX TAATTAATTA  
  3.1.2.10 Subfamily: LBX TTAATTAA  
  3.1.2.11 Subfamily: MSX ACCAATTA  
  3.1.2.12 Subfamily: NANOG CCATTT  
  3.1.2.13 Subfamily: NK-1 CTAATTAG  
  3.1.2.14 Subfamily: NK-2.1 CCACTTGA  
  3.1.2.15 Subfamily: NK-2.2 CCACTTGA  
  3.1.2.16 Subfamily: NK-3 AAGTACTT  
  3.1.2.17 Subfamily: NK-4 CCACTTAA  
  3.1.2.18 Subfamily: NK-5/HMX AGCAATTAA  
  3.1.2.19 Subfamily: NK-6 AATAATTA  
  3.1.2.20 Subfamily: NOTO    
  3.1.2.21 Subfamily: TLX AATTAATA  
  3.1.2.22 Subfamily: VAX TAATTA  
  3.1.2.23 Subfamily: VENTX    
  3.1.3 Family: Paired-related HD factors    
  3.1.3.1 Subfamily: ALX TTAATTAA  
  3.1.3.2 Subfamily: ARGFX    
  3.1.3.3 Subfamily: ARX TTAATTAA  
  3.1.3.4 Subfamily: DMBX GGATTA  
  3.1.3.5 Subfamily: DPRX    
  3.1.3.6 Subfamily: DRGX    
  3.1.3.7 Subfamily: DUX TCTAATTGAGAATTAC  
  3.1.3.8 Subfamily: ESX TTAATTAA  
  3.1.3.9 Subfamily: GSC GGATTA  
  3.1.3.10 Subfamily: HESX TAATTGAATTA  
  3.1.3.11 Subfamily: HOPX    
  3.1.3.12 Subfamily: ISX CTAATTAG  
  3.1.3.13 Subfamily: LEUTX    
  3.1.3.14 Subfamily: MIX    
  3.1.3.15 Subfamily: NOBOX CTAATTAG  
  3.1.3.16 Subfamily: OTP TTAATTAA  
  3.1.3.17 Subfamily: OTX GGGATTAA  
  3.1.3.18 Subfamily: PHOX ATAATTAA  
  3.1.3.19 Subfamily: PITX GGGATTAA  
  3.1.3.20 Subfamily: PROP TTAATTAA  
  3.1.3.21 Subfamily: PRRX GCTAATTAGC  
  3.1.3.22 Subfamily: RAX CTAATTAG  
  3.1.3.23 Subfamily: RHOX CTAATTAG  
  3.1.3.24 Subfamily: SEBOX    
  3.1.3.25 Subfamily: SHOX TTAATTAA  
  3.1.3.26 Subfamily: TPRX    
  3.1.3.27 Subfamily: UNCX TTAATTAA  
  3.1.3.28 Subfamily: VSX TTAATTAA  
  3.1.4 Family: TALE-type homeo domain factors    
  3.1.4.1 Subfamily: IRX (Iroquois) TACATGTA  
  3.1.4.2 Subfamily: MEIS AGCTGTCAA  
  3.1.4.3 Subfamily: MKX (Mohawk)    
  3.1.4.4 Subfamily: PBX CATCAAT  
  3.1.4.5 Subfamily: PKNOX ACCTGTCAAT  
  3.1.4.6 Subfamily: TGIF AGCTGTCAAT  
  3.1.5 Family: HD-LIM factors AATTAA;  
  3.1.5.1 Subfamily: ISL ATCAATTAA  
  3.1.5.2 Subfamily: Lhx-1-like factors TTAATTAA  
  3.1.5.3 Subfamily: Lhx-2-like factors TAATTA  
  3.1.5.4 Subfamily: Lhx-3-like factors TAATTA  
  3.1.5.5 Subfamily: Lhx-6-like factors CTAATTAG  
  3.1.5.6 Subfamily: Lmx TTAATTAA  
  3.1.6 Family: HD-SINE factors GGTATCA  
  3.1.6.1 Subfamily: SIX1-like factors GGGTATCA  
  3.1.6.2 Subfamily: SIX3-like factors GGGTATCA  
  3.1.6.3 Subfamily: SIX4-like factors GGTGTCA  
  3.1.7 Family: HD-PROS factors    
  3.1.8 Family: HD-ZF factors    
  3.1.8.1 Subfamily: ADNP    
  3.1.8.2 Subfamily: TSHZ    
  3.1.8.3 Subfamily: ZEB CACCTG  
  3.1.8.4 Subfamily: ZFHX    
  3.1.8.5 Subfamily: ZHX ATCGTTTT  
  3.1.9 Family: HD-CUT factors    
  3.1.9.1 Subfamily: ONECUT AAATCAAT  
  3.1.9.2 Subfamily: CUX TGATCA  
  3.1.9.3 Subfamily: SATB TAATGA  
  3.1.10 Family: POU domain factors    
  3.1.10.1 Subfamily: POU1 (Pit-1-like factors) TAATTAATTA  
  3.1.10.2 Subfamily: POU2 (Oct-1/2-like factors) TATGCAAAT  
  3.1.10.3 Subfamily: POU3 (Oct-6-like factors) TAATTAATTA  
  3.1.10.4 Subfamily: POU4 (Brn-3-like factors) ATTAATGA  
  3.1.10.5 Subfamily: POU5 (Oct-3/4-like factors)    
  3.1.10.6 Subfamily: POU6 (Brn-5-like factors) TAATGAG  
  3.1.10.7 Subfamily: HNF1-like factors GTTAATGATTAAC  
  3.1.10.8 Subfamily: HDX-like factors GAAATCA  
  3.1.11 Family: PHTF factors    
  3.2 Class: Paired box factors TRANSFAC class description Further information  
  3.2.1 Family: Paired plus homeo domain CTAATTAG  
  3.2.1.1 Subfamily: PAX-3/7 CTAATTAG  
  3.2.1.2 Subfamily: PAX-4/6 CTAATTAG  
  3.2.2 Family: Paired domain only    
  3.2.2.1 Subfamily: PAX-1/9 (no homeo remnant)    
  3.2.2.2 Subfamily: PAX-2-like factors (partial homeobox) GTCATGCGTGA  
  3.3 Class: Fork head / winged helix factors TRANSFAC class description Further information  
  3.3.1 Family: Forkhead box (FOX) factors TGTTT  
  3.3.1.1 Subfamily: FOXA TGTTTGTTT  
  3.3.1.2 Subfamily: FOXB    
  3.3.1.3 Subfamily: FOXC TGTTTATTTAC  
  3.3.1.4 Subfamily: FOXD TGTTTACTTAAG  
  3.3.1.5 Subfamily: FOXE    
  3.3.1.6 Subfamily: FOXF TGTTTATATG  
  3.3.1.7 Subfamily: FOXG TTTGTTTTT  
  3.3.1.8 Subfamily: FOXH TGTGTATT  
  3.3.1.9 Subfamily: FOXI TGTTTGTTTA  
  3.3.1.10 Subfamily: FOXJ TGTTTGTTTA  
  3.3.1.11 Subfamily: FOXK TTGTTTAC  
  3.3.1.12 Subfamily: FOXL TGTTTATGT  
  3.3.1.13 Subfamily: FOXM CTGTTTAT  
  3.3.1.14 Subfamily: FOXN    
  3.3.1.15 Subfamily: FOXO TTGTTTAC  
  3.3.1.16 Subfamily: FOXP TTGTTTCA  
  3.3.1.17 Subfamily: FOXQ    
  3.3.1.18 Subfamily: FOXR    
  3.3.1.19 Subfamily: FOXS    
  3.3.2 Family: E2F-related factors    
  3.3.2.1 Subfamily: E2F    
  3.3.2.2 Subfamily: Dp-1    
  3.3.3 Family: RFX-related factors    
  3.4 Class: Heat shock factors TRANSFAC class description Further information  
  3.4.1 Family: HSF factors TTCCAGAAGCTTC  
  3.5 Class: Tryptophan cluster factors TRANSFAC class description Further information  
  3.5.1 Family: Myb/SANT domain factors    
  3.5.1.1 Subfamily: Myb-like factors CAGTTG  
  3.5.1.2 Subfamily: NCoR-like factors    
  3.5.1.3 Subfamily: MIER-like factors    
  3.5.1.4 Subfamily: DNAJC-like factors    
  3.5.1.5 Subfamily: SMARCA-like factors    
  3.5.1.6 Subfamily: TADA2-like factors    
  3.5.1.7 Subfamily: DMTF-like factors CCCGGATGT  
  3.5.1.0 Subfamily: Other Myb-like factors    
  3.5.2 Family: Ets-related factors GGAAG  
  3.5.2.1 Subfamily: Ets-like factors CCGGAAG  
  3.5.2.2 Subfamily: Elk-like factors CCGGAAG  
  3.5.2.3 Subfamily: Elf-1-like factors CCGGAAAT  
  3.5.2.4 Subfamily: EHF-like factors CCGGAAGT  
  3.5.2.5 Subfamily: Spi-like factors AGAGGAAG  
  3.5.2.6 Subfamily: ETV6-like factors CCCGGAAGT  
  3.5.2.7 Subfamily: SPDEF-like factors CCGGATGT  
  3.5.3 Family: Interferon-regulatory factors AAGTGAA  
  3.6 Class: TEA domain factors TRANSFAC class description Further information  
  3.6.1 Family: TEF-1-related factors CATTCC  
  3.7 Class: ARID domain factors TRANSFAC class description Class description Further information  
  3.7.1 Family: ARID-related factors    
  3.7.1.1 Subfamily: ARID1    
  3.7.1.2 Subfamily: ARID2    
  3.7.1.3 Subfamily: ARID3    
  3.7.1.4 Subfamily: ARID4    
  3.7.1.5 Subfamily: ARID5    
  3.7.1.6 Subfamily: JARID1    
  3.7.1.7 Subfamily: JARID2    
4 Superclass: Other all-α-helical DNA-binding domains Class description  
  4.1 Class: High-mobility group (HMG) domain factors TRANSFAC class description Further information  
  4.1.1 Family: SOX-related factors ACAA  
  4.1.1.1 Subfamily: Group A AAACAAA  
  4.1.1.2 Subfamily: Group B AACAAAG  
  4.1.1.3 Subfamily: Group C AACAAAGG  
  4.1.1.4 Subfamily: Group D AACAAT  
  4.1.1.5 Subfamily: Group E AAACAAAGG  
  4.1.1.6 Subfamily: Group F AACAAT  
  4.1.1.7 Subfamily: Group G    
  4.1.1.8 Subfamily: Group H GGACAATGG  
  4.1.1.9 Subfamily: Further Sox-related factors TTCATTCAA  
  4.1.2 Family: TOX-related factors    
  4.1.3 Family: TCF-7-related factors TTCAAAG  
  4.1.4 Family: PBRM1-related factors    
  4.1.5 Family: WHSC1-related factors GGCATTGGAAA  
  4.1.6 Family: UBF-related factors    
  4.1.6.1 Subfamily: UBF-related factors    
  4.1.6.2 Subfamily: UBF-like proteins    
  4.1.7 Family: TFAM    
  4.2 Class: Heteromeric CCAAT-binding factors Class description  
  4.2.1 Family: Heteromeric CCAAT-binding factors CCAAT  
5 Superclass: α-Helices exposed by β-structures Class description   
  5.1 Class: MADS box factors TRANSFAC class description Further information  
  5.1.1 Family: Regulators of differentiation CTAAAAATAG  
  5.1.1.1 Subfamily: MEF-2 CTAAAAATAG  
  5.1.2 Family: Responders to external signals (SRF/RLM1) CCATATATGG  
  5.2 Class: E2-related factors  
  5.2.1 Family: E2    
  5.3 Class: SAND domain factors Class description Further information  
  5.3.1 Family: AIRE ATTGGTTATATTGGTTA  
  5.3.2 Family: DEAF TTTCCG  
  5.3.3 Family: GMEB CTTCTGTATGAGCGCCAGTAT  
  5.3.3.1 Subfamily: GMEB    
  5.3.4 Family: Sp110    
  5.3.5 Family: Sp140/Sp100    
  5.3.5.1 Subfamily: Sp140-like factors    
  5.3.5.2 Subfamily: Sp100    
6 Superclass: Immunoglobulin fold Class description  
  6.1 Class: Rel homology region (RHR) factors TRANSFAC class description Further information  
  6.1.1 Family: NF-kappaB-related factors    
  6.1.1.1 Subfamily: NF-kappaB p50 subunit-like factors GGGAATTTCC  
  6.1.1.2 Subfamily: NF-kappaB p65 subunit-like factors GAAAATTTCC  
  6.1.2 Family: Ankyrin domain-only factors    
  6.1.2.1 Subfamily: IκB-related factors    
  6.1.2.2 Subfamily: RelA-associated inhibitor    
  6.1.3 Family: NFAT-related factors ATGGAAA  
  6.1.4 Family: CSL-related factors CGTGGGAA  
  6.1.4.1 Subfamily: M CGTGGGAA  
  6.1.5 Family: Early B-Cell Factor-related factors TCCCTAGGGA  
  6.2 Class: STAT domain factors Class description Further information  
  6.2.1 Family: STAT factors TTCCCGGAA  
  6.3 Class: p53 domain factors Class description Further information  
  6.3.1 Family: p53-related factors GGACATGCCCGGGCATGTCC  
  6.4 Class: Runt domain factors TRANSFAC class description Further information  
  6.4.1 Family: Runt-related factors TGTGGT  
  6.5 Class: T-Box factors TRANSFAC class description Further information  
  6.5.1 Family: Brachyury-related factors TCACACCTAGGTGTGAAATT  
  6.5.2 Family: TBrain-related factors AGGTGTGAA  
  6.5.3 Family: TBX1-related factors    
  6.5.4 Family: TBX2-related factors AGGTGTGAG  
  6.5.5 Family: TBX6-related factors AATTTCACACCTAGGTGTGAAATT  
  6.6 Class: NDT80 domain factors Class description  
  6.6.1 Family: Myelin gene regulatory factor-related factors    
  6.7 Class: Grainyhead domain factors TRANSFAC class description  
  6.7.1 Family: Grainyhead-related factors    
  6.7.1.1 Subfamily: GRH-like proteins    
  6.7.2 Family: CP2-related factors GCACAAACCAG  
7 Superclass: β-Hairpin exposed by an α/β-scaffold Class description  
  7.1 Class: SMAD/NF-1 DNA-binding domain factors TRANSFAC class description Further information  
  7.1.1 Family: SMAD factors GTCTAGAC  
  7.1.1.1 Subfamily: Regulatory Smads (R-Smad)    
  7.1.1.2 Subfamily: Co-activating Smads (Co-Smad)    
  7.1.1.3 Subfamily: Repressor-Smads (I-Smad)    
  7.1.2 Family: Nuclear factor 1 TTGGCTATATGCCAA  
  7.2 Class: GCM domain factors TRANSFAC class description  
  7.2.1 Family: GCM factors    
8 Superclass: β-Sheet binding to DNA Class description  
  8.1 Class: TATA-binding proteins Class description Further information  
  8.1.1 Family: TBP-related factors TATAAA)  
  8.2 Class: A.T hook factors Class description Further information  
  8.2.1 Family: HMGA factors GGAAATT  
9  Superclass: β-Barrel DNA-binding domains Class description  
  9.1 Class: Cold-shock domain factors TRANSFAC class description Further information  
  9.1.1 Family: Dbp factors CCAATCAG  
  9.1.1.1 Subfamily: A (DbpA-like)    
  9.1.1.2 Subfamily: B (DbpB/YB-1-like)    
  9.1.1.3 Subfamily: C (FRG Y2-like)    
0  Superclass: Yet undefined DNA-binding domains Class description  
  0.1 Class: AXUD/CSRNP domain factors Class description  
  0.1.1 Family: CSRNP factors AGAGTG  
  0.2 Class: NonO domain factors Class description  
  0.2.1 Family: NonO-related factors    
  0.3 Class: Leucine-rich repeat flightless-interacting proteins Class description  
  0.3.1 Family: LRRFIP factors AGCCCCCGGCG  
  0.4 Class: NFX1-type putative zinc finger factors Class description  
  0.4.1 Family: NFX1 CCTAGCAACAGATG  
  0.5 Class: GTF2I domain factors Class description  
  0.5.1 Family: TFII-I-related YCAYY  
  0.6 Class: CG-1 domain factors Class description  
  0.6.1 Family: CAMTA factors CGCG  
  0.0 Class: Uncharacterized Class description  
  0.0.1 Family: Nuclear localized protein 1    
  0.0.2 Family: PHF5    
  0.0.3 Family: RFXANK CAGTTGCCTAGCAACTA  
  0.0.4 Family: RFXAP CAGTTGCCTAGCAACTA  
  0.0.5 Family: PUR TGGCCAGGG  
  0.0.6 Family: NRF CGCATGCGCA  
  0.0.7 Family: SPEN factors