geneXplain
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Upstream analysis


Discover unanticipated causal relationships in your data with our unique upstream analysis.

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The geneXplain platform


A versatile online toolbox for bioinformatics, systems biology and cheminformatics

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TRANSFAC


The Gold Standard: more than 6500 positional weight matrices, and more than 30 million sites from high-throughput approaches!

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Cheminformatics


Predict activity spectra of substances, and exploredrug-drug interactions and relationships between biological activities with PASS, GUSAR and PharmaExpert.

Bioinformatics

Integrated promoter and pathway (“upstream”) analysis lies at the core of our approach to analyzing changes in gene or protein signatures in a cell as a consequence, for example, of disease pathogenesis. To reveal the full power of the platform and the upstream analysis, we recommend to apply it together with the databases TRANSFAC® and TRANSPATH®.

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The geneXplain platform is designed to ease the life of the bioinformatics expert who is in charge to evaluate experimental high-throughput data, but also effectively supports the experimental researcher to interpret his/her valuable data with an intuitive user interface. You are cordially invited to learn more about the geneXplain platform.

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The gold standard in the field of transcriptional regulation. This database comprises a unique collection of information about transcription factors (TFs), their genomic binding sites and binding site models (positional weight matrices), suitable for search for new TF binding sites. Learn more about the TRANSFAC database.

Systems biology

It is our wish to contribute to state of the art systems biological research by offering a comprehensive view of molecular and genetic networks operating in and constituting human cells.
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In addition to the TRANSPATH database (see above), we make available the world’s largest collection of interactions and pathways, the GeneWays database, through our geneXplain platform.
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The Human Proteome Survey Database (HumanPSD) is a rich compendium of human, mouse and rat proteins, their disease associations, biomarker properties and drug associations.

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The most comprehensive information repository on enzymes and enzyme ligand data. BRENDA is an indispensable resource when working with metabolic networks.

Cheminformatics

As soon as a potential target has been identified, for instance with our proprietary upstream analysis approach, the next question will be about drugs that may bind to that target. To adress this and related problems, we incorporated several stand-alone cheminformatics tools in our product range.


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Based on the world’s largest data collections pertaining to the biological activities of chemical compounds and their structures, PASS and PharmaExpert enable users to identify potential lead structures out of millions of chemical substances, thereby efficiently shortening development times for specific drugs or molecular probes for research purposes.


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PharmaExpert analyzes the relationships between biological activities, drug-drug interactions and multiple targeting of chemical compounds and selects compounds that have a pre-defined biological activity. It helps answer a question like “How to select the most promising compounds among those known to interact with the selected protein?


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Particularly valuable for experts is the program GUSAR, which enables construction of highly specific models based on own data sets.

News

Find history in our archive.

September 10-13, 2017

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GeneXplain will be taking part at the EUROTOX Congress of the European Societies of Toxicology in Bratislava. Visit us at Poster Session 2 that will be held on Monday, September 11 from 15:00 to 18:30. We will present „Bioinformatic pipelines to predict respiratory toxicity and reduce animal testing“ on board number P-04-05-01.

EUROTOX 2017

September 8, 2017

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GeneXplain announces:

geneXplain platform 4.6

August 8, 2017

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GeneXplain announces:

BRENDA® 2017.2

June 7, 2017

Now available for download:

Volume 1 of the MIMOmics series of ebooks:

The geneXplain platform

May 2, 2017

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GeneXplain announces:

TRANSFAC® 2017.2
TRANSPATH® 2017.2
HumanPSDTM 2017.2

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