Pathway Omics suite

Integrating seamlessly within the TRANSFAC ecosystem, the Pathway Omics Suite delivers a streamlined, end‑to‑end workflow for signalling‑ and metabolic‑pathway analysis of multi‑omics datasets. From project set‑up to curated result report, it supports:

  • Upload and management of diverse omics layers (e.g., transcriptomics, epigenomics, proteomics) for a unified pathway‑centric analysis.
  • Data annotation and filtering to identify differentially regulated molecular features.
  • Integrated regulatory genome‑region (promoter/enhancer) and pathway network analysis, enabling upstream regulator (master switch) identification from observed gene‑set changes.
  • Automatic generation of publication‑ready visualisations (pathway diagrams, regulator trees, network maps) and a fully documented results report summarising methods and outputs.

With its no‑coding GUI and robust backend (leveraging curated databases like TRANSFAC® and TRANSPATH), the Suite empowers research teams in academia and pharma to move from raw omics data to mechanistic insight — identifying key nodes in pathway regulation, actionable targets and potential biomarkers.

For pharmaceutical & biotech R&D

Designed for translational research and target discovery, Pathway Omics Suite enables pharma R&D teams to extract actionable insights from complex omics data. Through integrated regulatory and pathway network analysis, the suite identifies key upstream regulators—such as master transcription factors and signaling molecules—implicated in disease mechanisms.

This automated workflow supports:

  • Multi‑omics integration (e.g., RNA‑seq, ChIP‑seq, proteomics)
  • Pathway‑based prioritization of druggable targets
  • Biomarker candidate discovery
  • Visual analytics for mechanism-of-action studies
  • Regulatory and method traceability via detailed reports

Leveraging the curated TRANSFAC® and TRANSPATH® databases, Pathway Omics Suite accelerates hypothesis generation, target validation, and biomarker development with scientifically robust outputs.

For academic researchers

Built for systems biology and integrative genomics research, the Pathway Omics Suite guides scientists from raw multi‑omics data to mechanistic insight through an intuitive, end‑to‑end workflow.

Key features include:

  • Support for diverse omics layers (transcriptomics, epigenomics, proteomics)
  • Upstream regulator analysis from differentially expressed or modified genes
  • Pathway-level visualization of biological processes and regulatory cascades
  • Hypothesis generation for functional studies
  • Exportable, publication-ready figures and detailed methodology reports
  • Ideal for grants and publications, the suite enhances reproducibility, transparency, and data integration using the gold-standard TRANSFAC® and TRANSPATH® knowledge bases.