|
|
ZBED1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ZBED1 |
|
1 |
1153 |
2613 |
591 |
711 |
|
TF group |
znf_BED |
|
2 |
441 |
22 |
56 |
5321 |
|
Polypeptide used |
DBD |
|
3 |
3841 |
15 |
2065 |
8 |
|
Ligand sequence |
TAATAG20NCG |
|
4 |
6 |
8 |
0 |
5510 |
|
Batch of SELEX experiment |
W |
|
5 |
0 |
5373 |
6 |
18 |
|
Seed sequence |
NTATCGCGAYATR |
|
6 |
127 |
3 |
5979 |
2 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
4 |
5357 |
0 |
110 |
|
SELEX cycle |
3 |
|
8 |
4 |
4 |
6013 |
0 |
|
Number of repeats |
dimeric |
|
9 |
5326 |
9 |
12 |
0 |
|
Comment |
|
|
10 |
6 |
4330 |
0 |
865 |
|
Representative matrix |
yes |
|
11 |
5276 |
11 |
10 |
144 |
|
|
|
|
12 |
118 |
273 |
635 |
5055 |
|
Source: |
|
|
13 |
3123 |
270 |
1876 |
608 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|