|
VSX1_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
VSX1 |
1 |
756 |
8453 |
561 |
5119 |
|
TF group |
homeodomain |
2 |
1836 |
3131 |
572 |
13572 |
|
Polypeptide used |
DBD |
3 |
13572 |
626 |
553 |
554 |
|
Ligand sequence |
TGGTTC20NTTT |
4 |
13572 |
154 |
172 |
90 |
|
Batch of SELEX experiment |
Z |
5 |
172 |
199 |
103 |
13572 |
|
Seed sequence |
YTAATTAN |
6 |
898 |
761 |
984 |
13572 |
|
Hamming distance of sequences to seed |
1 |
7 |
13572 |
516 |
3337 |
1372 |
|
SELEX cycle |
2 |
8 |
2626 |
3555 |
3658 |
3732 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
VSX1_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
VSX1 |
1 |
2215 |
1033 |
2220 |
1479 |
|
TF group |
homeodomain |
2 |
953 |
1042 |
4207 |
746 |
|
Polypeptide used |
full |
3 |
853 |
5164 |
1084 |
1784 |
|
Ligand sequence |
TCGGGG20NGGT |
4 |
864 |
6490 |
531 |
6947 |
|
Batch of SELEX experiment |
AE |
5 |
6947 |
1399 |
531 |
922 |
|
Seed sequence |
NNYTAATTANN |
6 |
6947 |
305 |
382 |
209 |
|
Hamming distance of sequences to seed |
1 |
7 |
94 |
383 |
184 |
6947 |
|
SELEX cycle |
3 |
8 |
1028 |
1039 |
1095 |
6947 |
|
Number of repeats |
monomeric |
9 |
6947 |
476 |
4337 |
1269 |
|
Comment |
|
10 |
1844 |
1224 |
2577 |
1302 |
|
Representative matrix |
no |
11 |
1291 |
2810 |
1313 |
1533 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Vsx1_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Vsx1 |
1 |
1772 |
4996 |
2152 |
3109 |
|
TF group |
homeodomain |
2 |
1094 |
6246 |
626 |
5782 |
|
Polypeptide used |
DBD |
3 |
12029 |
1424 |
1053 |
1041 |
|
Ligand sequence |
TGCAGA20NCG |
4 |
12029 |
825 |
309 |
361 |
|
Batch of SELEX experiment |
P |
5 |
134 |
101 |
31 |
12029 |
|
Seed sequence |
NYAATTAN |
6 |
559 |
1014 |
506 |
12029 |
|
Hamming distance of sequences to seed |
1 |
7 |
12029 |
464 |
217 |
987 |
|
SELEX cycle |
2 |
8 |
3847 |
2961 |
3109 |
2112 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |