|
TFAP2B_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TFAP2B |
1 |
716 |
763 |
180 |
1520 |
|
TF group |
TFAP |
2 |
672 |
1006 |
3179 |
102 |
|
Polypeptide used |
DBD |
3 |
23 |
3179 |
261 |
23 |
|
Ligand sequence |
TCGTTA20NTTT |
4 |
1 |
3179 |
0 |
34 |
|
Batch of SELEX experiment |
Y |
5 |
11 |
2054 |
152 |
963 |
|
Seed sequence |
NGCCNNNNGGCN |
6 |
209 |
1199 |
679 |
1092 |
|
Hamming distance of sequences to seed |
1 |
7 |
1297 |
815 |
888 |
179 |
|
SELEX cycle |
4 |
8 |
1274 |
213 |
1693 |
0 |
|
Number of repeats |
dimeric |
9 |
83 |
17 |
3179 |
0 |
|
Comment |
|
10 |
37 |
417 |
3179 |
12 |
|
Representative
matrix |
no |
11 |
92 |
3179 |
484 |
239 |
|
Source: |
|
12 |
1842 |
189 |
670 |
479 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
TFAP2B_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TFAP2B |
1 |
1784 |
1412 |
232 |
1121 |
|
TF group |
TFAP |
2 |
36 |
609 |
3940 |
30 |
|
Polypeptide used |
DBD |
3 |
0 |
4549 |
4 |
0 |
|
Ligand sequence |
TCGTTA20NTTT |
4 |
0 |
4549 |
1 |
158 |
|
Batch of SELEX experiment |
Y |
5 |
16 |
1204 |
612 |
2716 |
|
Seed sequence |
NSCCNNNGGSN |
6 |
576 |
2126 |
1498 |
348 |
|
Hamming distance of sequences to seed |
1 |
7 |
3480 |
608 |
446 |
14 |
|
SELEX cycle |
4 |
8 |
235 |
4 |
4549 |
2 |
|
Number of repeats |
dimeric |
9 |
6 |
10 |
4549 |
1 |
|
Comment |
|
10 |
47 |
4250 |
299 |
25 |
|
Representative matrix |
no |
11 |
1822 |
371 |
1149 |
1207 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
TFAP2B_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TFAP2B |
1 |
306 |
153 |
95 |
751 |
|
TF group |
TFAP |
2 |
0 |
329 |
1063 |
0 |
|
Polypeptide used |
DBD |
3 |
0 |
924 |
0 |
0 |
|
Ligand sequence |
TCGTTA20NTTT |
4 |
0 |
871 |
0 |
0 |
|
Batch of SELEX experiment |
Y |
5 |
5 |
774 |
22 |
136 |
|
Seed sequence |
NSCCNNNNNGGSN |
6 |
32 |
469 |
132 |
571 |
|
Hamming distance of sequences to seed |
0 |
7 |
147 |
345 |
392 |
384 |
|
SELEX cycle |
4 |
8 |
583 |
200 |
367 |
41 |
|
Number of repeats |
dimeric |
9 |
292 |
53 |
837 |
11 |
|
Comment |
|
10 |
0 |
0 |
1236 |
0 |
|
Representative
matrix |
no |
11 |
0 |
0 |
1346 |
0 |
|
|
|
12 |
0 |
897 |
163 |
0 |
|
Source: |
|
13 |
650 |
106 |
179 |
226 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |