|
|
TEF_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
TEF |
|
1 |
541 |
1053 |
853 |
1154 |
|
TF group |
bZIP |
|
2 |
1971 |
372 |
1630 |
8 |
|
Polypeptide used |
DBD |
|
3 |
90 |
18 |
5 |
3601 |
|
Ligand sequence |
TATAAG20NTA |
|
4 |
107 |
0 |
31 |
3601 |
|
Batch of SELEX experiment |
Q |
|
5 |
3601 |
0 |
108 |
0 |
|
Seed sequence |
NRTTACRTAAYN |
|
6 |
17 |
3601 |
0 |
446 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1324 |
0 |
2277 |
0 |
|
SELEX cycle |
3 |
|
8 |
0 |
133 |
43 |
3601 |
|
Number of repeats |
dimeric |
|
9 |
3601 |
76 |
11 |
161 |
|
Comment |
|
|
10 |
3601 |
0 |
19 |
10 |
|
Representative matrix |
no |
|
11 |
0 |
2120 |
269 |
1481 |
|
Source: |
|
|
12 |
1383 |
1141 |
554 |
522 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
TEF_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
TEF |
|
1 |
1536 |
1291 |
1408 |
1730 |
|
TF group |
bZIP |
|
2 |
3224 |
1173 |
2741 |
719 |
|
Polypeptide used |
FL |
|
3 |
37 |
7 |
28 |
5964 |
|
Ligand sequence |
AGGTG14N |
|
4 |
32 |
0 |
41 |
5964 |
|
Batch of SELEX experiment |
S |
|
5 |
5964 |
5 |
970 |
82 |
|
Seed sequence |
NRTTACRTAAYN |
|
6 |
53 |
5964 |
182 |
1476 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
3789 |
129 |
2175 |
20 |
|
SELEX cycle |
3 |
|
8 |
56 |
519 |
19 |
5964 |
|
Number of repeats |
dimeric |
|
9 |
5964 |
12 |
0 |
66 |
|
Comment |
|
|
10 |
5964 |
5 |
0 |
10 |
|
Representative
matrix |
no |
|
11 |
885 |
2991 |
1227 |
2974 |
|
Source: |
|
|
12 |
1829 |
1661 |
1208 |
1267 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|