|
TBX21_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX21 |
1 |
2552 |
1729 |
11405 |
1649 |
|
TF group |
TBX |
2 |
175 |
423 |
13641 |
385 |
|
Polypeptide used |
DBD |
3 |
67 |
1387 |
125 |
13164 |
|
Ligand sequence |
TACTGC40NGTC |
4 |
69 |
34 |
13932 |
39 |
|
Batch of SELEX experiment |
AI |
5 |
1547 |
2507 |
168 |
12163 |
|
Seed sequence |
GGTGTGANNTCACACC |
6 |
1092 |
855 |
12482 |
2687 |
|
Hamming distance of sequences to seed |
2 |
7 |
9191 |
28 |
240 |
103 |
|
SELEX cycle |
3 |
8 |
4025 |
2070 |
837 |
3535 |
|
Number of repeats |
dimeric |
9 |
3533 |
1224 |
1916 |
4604 |
|
Comment |
|
10 |
260 |
219 |
100 |
13524 |
|
Representative matrix |
no |
11 |
2594 |
7499 |
1365 |
760 |
|
|
|
12 |
8618 |
145 |
2123 |
1063 |
|
|
|
13 |
14 |
8478 |
41 |
40 |
|
|
|
14 |
8991 |
63 |
1184 |
52 |
|
Source: |
|
15 |
240 |
8477 |
313 |
72 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
1067 |
7761 |
1333 |
2231 |
|
|
|
|
|
|
|
|
|
|
|
|
TBX21_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX21 |
1 |
20083 |
4960 |
13967 |
12371 |
|
TF group |
TBX |
2 |
51381 |
568 |
6567 |
2604 |
|
Polypeptide used |
DBD |
3 |
5828 |
4587 |
51381 |
4351 |
|
Ligand sequence |
TACTGC40NGTC |
4 |
24 |
219 |
51381 |
175 |
|
Batch of SELEX experiment |
AI |
5 |
49 |
2502 |
206 |
51381 |
|
Seed sequence |
NAGGTGTGAA |
6 |
22 |
49 |
51381 |
31 |
|
Hamming distance of sequences to seed |
1 |
7 |
1925 |
7069 |
242 |
51381 |
|
SELEX cycle |
3 |
8 |
772 |
2557 |
51381 |
5174 |
|
Number of repeats |
monomeric |
9 |
51381 |
98 |
412 |
41 |
|
Comment |
|
10 |
51381 |
9473 |
4832 |
17787 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
TBX21_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX21 |
1 |
362 |
1470 |
237 |
13899 |
|
TF group |
TBX |
2 |
2735 |
5472 |
1554 |
354 |
|
Polypeptide used |
DBD |
3 |
9452 |
149 |
2124 |
700 |
|
Ligand sequence |
TACTGC40NGTC |
4 |
67 |
9112 |
52 |
16 |
|
Batch of SELEX experiment |
AI |
5 |
9853 |
38 |
1111 |
27 |
|
Seed sequence |
TNACACCTNNNAGGTGTNA |
6 |
184 |
9077 |
201 |
94 |
|
Hamming distance of sequences to seed |
2 |
7 |
1312 |
8039 |
1698 |
1926 |
|
SELEX cycle |
3 |
8 |
1384 |
2243 |
614 |
13172 |
|
Number of repeats |
dimeric |
9 |
2851 |
3053 |
1789 |
3915 |
|
Comment |
|
10 |
3262 |
2535 |
2994 |
2961 |
|
Representative matrix |
yes |
11 |
4483 |
1080 |
4004 |
2546 |
|
|
|
12 |
9483 |
349 |
1716 |
875 |
|
|
|
13 |
2379 |
1932 |
12765 |
1691 |
|
|
|
14 |
109 |
443 |
14960 |
253 |
|
|
|
15 |
54 |
1373 |
183 |
13971 |
|
|
|
16 |
27 |
11 |
15077 |
16 |
|
|
|
17 |
1357 |
2732 |
225 |
12798 |
|
Source: |
|
18 |
438 |
1038 |
10048 |
2490 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
19 |
9769 |
78 |
1022 |
199 |
|
|
|
|
|
|
|
|
|
|
|
|
TBX21_d3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX21 |
1 |
404 |
25 |
5030 |
160 |
|
TF group |
TBX |
2 |
2 |
0 |
5648 |
4 |
|
Polypeptide used |
full |
3 |
0 |
74 |
8 |
4564 |
|
Ligand sequence |
TGGTCT20NCTT |
4 |
4 |
4 |
5233 |
0 |
|
Batch of SELEX experiment |
AD |
5 |
33 |
101 |
3 |
4258 |
|
Seed sequence |
GGTGTGAWATCACACC |
6 |
13 |
12 |
5133 |
88 |
|
Hamming distance of sequences to seed |
2 |
7 |
3386 |
16 |
0 |
9 |
|
SELEX cycle |
4 |
8 |
1112 |
323 |
76 |
2679 |
|
Number of repeats |
dimeric |
9 |
3129 |
286 |
588 |
83 |
|
Comment |
|
10 |
20 |
19 |
2 |
4342 |
|
Representative matrix |
no |
11 |
712 |
3620 |
131 |
46 |
|
|
|
12 |
3479 |
0 |
24 |
36 |
|
|
|
13 |
8 |
3857 |
0 |
2 |
|
|
|
14 |
3519 |
6 |
0 |
4 |
|
Source: |
|
15 |
28 |
3601 |
12 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
184 |
3161 |
44 |
64 |
|
|
|
|
|
|
|
|
|
|
|
|
TBX21_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX21 |
1 |
2322 |
263 |
937 |
872 |
|
TF group |
TBX |
2 |
4395 |
30 |
359 |
146 |
|
Polypeptide used |
full |
3 |
612 |
239 |
4395 |
398 |
|
Ligand sequence |
TGGTCT20NCTT |
4 |
2 |
17 |
4395 |
33 |
|
Batch of SELEX experiment |
AD |
5 |
6 |
180 |
16 |
4395 |
|
Seed sequence |
NAGGTGTGAA |
6 |
1 |
0 |
4395 |
2 |
|
Hamming distance of sequences to seed |
1 |
7 |
185 |
331 |
34 |
4395 |
|
SELEX cycle |
3 |
8 |
80 |
126 |
4395 |
364 |
|
Number of repeats |
monomeric |
9 |
4395 |
0 |
38 |
0 |
|
Comment |
|
10 |
4395 |
441 |
317 |
1287 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
TBX21_d4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX21 |
1 |
6 |
75 |
0 |
3141 |
|
TF group |
TBX |
2 |
404 |
1841 |
537 |
31 |
|
Polypeptide used |
full |
3 |
2242 |
5 |
12 |
4 |
|
Ligand sequence |
TGGTCT20NCTT |
4 |
1 |
2556 |
0 |
3 |
|
Batch of SELEX experiment |
AD |
5 |
2189 |
1 |
9 |
2 |
|
Seed sequence |
TNACACCTNNNAGGTGTNA |
6 |
23 |
2600 |
54 |
4 |
|
Hamming distance of sequences to seed |
2 |
7 |
164 |
2212 |
39 |
558 |
|
SELEX cycle |
4 |
8 |
663 |
234 |
38 |
2013 |
|
Number of repeats |
dimeric |
9 |
1176 |
557 |
460 |
523 |
|
Comment |
|
10 |
1479 |
591 |
244 |
230 |
|
Representative
matrix |
no |
11 |
1673 |
100 |
598 |
285 |
|
|
|
12 |
2081 |
0 |
166 |
97 |
|
|
|
13 |
136 |
85 |
3906 |
43 |
|
|
|
14 |
3 |
5 |
3889 |
2 |
|
|
|
15 |
4 |
237 |
17 |
2172 |
|
|
|
16 |
8 |
14 |
4491 |
5 |
|
|
|
17 |
33 |
29 |
3 |
3310 |
|
Source: |
|
18 |
17 |
29 |
3756 |
384 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
19 |
1960 |
7 |
26 |
0 |
|
|
|