|
TBX20_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX20 |
1 |
17764 |
380 |
2350 |
1111 |
|
TF group |
TBX |
2 |
2430 |
929 |
17313 |
887 |
|
Polypeptide used |
DBD |
3 |
18 |
128 |
18570 |
80 |
|
Ligand sequence |
TACTCA40NCTC |
4 |
26 |
783 |
98 |
17478 |
|
Batch of SELEX experiment |
AI |
5 |
19 |
39 |
18661 |
19 |
|
Seed sequence |
AGGTGTGAAGGTGTGA |
6 |
841 |
898 |
101 |
17185 |
|
Hamming distance of sequences to seed |
2 |
7 |
972 |
3081 |
16647 |
4961 |
|
SELEX cycle |
3 |
8 |
18652 |
20 |
194 |
93 |
|
Number of repeats |
dimeric |
9 |
16680 |
413 |
4666 |
2720 |
|
Comment |
|
10 |
4616 |
7530 |
15598 |
1481 |
|
Representative matrix |
yes |
11 |
31 |
1802 |
17689 |
4072 |
|
|
|
12 |
90 |
5837 |
194 |
16249 |
|
|
|
13 |
35 |
23 |
18879 |
21 |
|
|
|
14 |
569 |
1339 |
85 |
16919 |
|
Source: |
|
15 |
412 |
3296 |
16860 |
4227 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
18786 |
61 |
199 |
54 |
|
|
|
|
|
|
|
|
|
|
|
|
TBX20_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX20 |
1 |
1909 |
44 |
178 |
117 |
|
TF group |
TBX |
2 |
283 |
114 |
2716 |
333 |
|
Polypeptide used |
DBD |
3 |
3 |
18 |
2911 |
5 |
|
Ligand sequence |
TACTCA40NCTC |
4 |
4 |
218 |
21 |
2609 |
|
Batch of SELEX experiment |
AI |
5 |
2 |
0 |
2925 |
1 |
|
Seed sequence |
AGGTGTGAWWWTCACACCT |
6 |
97 |
243 |
13 |
2553 |
|
Hamming distance of sequences to seed |
2 |
7 |
72 |
251 |
2692 |
129 |
|
SELEX cycle |
3 |
8 |
1954 |
4 |
10 |
1 |
|
Number of repeats |
dimeric |
9 |
1590 |
198 |
178 |
324 |
|
Comment |
|
10 |
1362 |
216 |
143 |
783 |
|
Representative matrix |
no |
11 |
616 |
60 |
660 |
1742 |
|
|
|
12 |
4 |
6 |
4 |
2707 |
|
|
|
13 |
356 |
1790 |
731 |
88 |
|
|
|
14 |
1940 |
11 |
261 |
41 |
|
|
|
15 |
3 |
2083 |
3 |
9 |
|
|
|
16 |
1928 |
2 |
222 |
4 |
|
|
|
17 |
9 |
2073 |
24 |
49 |
|
Source: |
|
18 |
187 |
1790 |
567 |
525 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
19 |
290 |
382 |
82 |
2480 |
|
|
|
|
|
|
|
|
|
|
|
|
TBX20_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX20 |
1 |
3346 |
2447 |
7268 |
2357 |
|
TF group |
TBX |
2 |
2812 |
1749 |
1814 |
1774 |
|
Polypeptide used |
DBD |
3 |
4086 |
1898 |
2103 |
2165 |
|
Ligand sequence |
TACTCA40NCTC |
4 |
3995 |
697 |
1807 |
1650 |
|
Batch of SELEX experiment |
AI |
5 |
8149 |
69 |
721 |
365 |
|
Seed sequence |
HNHNAGGTGTGANHH |
6 |
1248 |
484 |
8149 |
635 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
35 |
8149 |
51 |
|
SELEX cycle |
3 |
8 |
24 |
465 |
104 |
8149 |
|
Number of repeats |
monomeric |
9 |
8 |
0 |
8149 |
25 |
|
Comment |
|
10 |
258 |
548 |
43 |
8149 |
|
Representative
matrix |
no |
11 |
216 |
1078 |
8149 |
2149 |
|
|
|
12 |
8149 |
9 |
21 |
37 |
|
|
|
13 |
5875 |
664 |
395 |
1216 |
|
Source: |
|
14 |
3508 |
3203 |
2410 |
1439 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
1838 |
1543 |
4919 |
4768 |
|
|
|
|
|
|
|
|
|
|
|
|
TBX20_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX20 |
1 |
197 |
4 |
121 |
250 |
|
TF group |
TBX |
2 |
572 |
23 |
54 |
24 |
|
Polypeptide used |
full |
3 |
50 |
34 |
572 |
26 |
|
Ligand sequence |
TCTTCT20NCTG |
4 |
0 |
0 |
572 |
40 |
|
Batch of SELEX experiment |
AE |
5 |
0 |
0 |
10 |
572 |
|
Seed sequence |
NAGGTGTGAAN |
6 |
0 |
1 |
572 |
4 |
|
Hamming distance of sequences to seed |
1 |
7 |
8 |
1 |
11 |
572 |
|
SELEX cycle |
4 |
8 |
48 |
10 |
572 |
82 |
|
Number of repeats |
monomeric |
9 |
572 |
1 |
6 |
10 |
|
Comment |
|
10 |
572 |
16 |
53 |
170 |
|
Representative matrix |
no |
11 |
154 |
60 |
300 |
59 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
TBX20_d3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX20 |
1 |
146 |
0 |
22 |
7 |
|
TF group |
TBX |
2 |
35 |
6 |
127 |
3 |
|
Polypeptide used |
full |
3 |
0 |
0 |
144 |
0 |
|
Ligand sequence |
TCTTCT20NCTG |
4 |
0 |
0 |
0 |
122 |
|
Batch of SELEX experiment |
AE |
5 |
0 |
0 |
142 |
0 |
|
Seed sequence |
AGGTGTKANGGTGTSA |
6 |
1 |
0 |
0 |
123 |
|
Hamming distance of sequences to seed |
2 |
7 |
4 |
6 |
96 |
33 |
|
SELEX cycle |
4 |
8 |
144 |
0 |
0 |
0 |
|
Number of repeats |
dimeric |
9 |
48 |
32 |
26 |
38 |
|
Comment |
possibly partial |
10 |
16 |
13 |
109 |
26 |
|
Representative
matrix |
no |
11 |
0 |
0 |
100 |
40 |
|
|
|
12 |
0 |
7 |
0 |
125 |
|
|
|
13 |
0 |
9 |
137 |
0 |
|
|
|
14 |
0 |
20 |
2 |
123 |
|
Source: |
|
15 |
0 |
39 |
106 |
12 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
143 |
0 |
2 |
0 |
|
|
|