|
TBX1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX1 |
1 |
6790 |
23 |
978 |
1855 |
|
TF group |
TBX |
2 |
1576 |
1003 |
6165 |
925 |
|
Polypeptide used |
DBD |
3 |
9 |
4 |
7564 |
26 |
|
Ligand sequence |
TACGGA40NGGC |
4 |
9 |
113 |
64 |
7491 |
|
Batch of SELEX experiment |
AI |
5 |
7 |
11 |
7557 |
15 |
|
Seed sequence |
AGGTGTGAAAAAAGGTGTGA |
6 |
58 |
414 |
37 |
7446 |
|
Hamming distance of sequences to seed |
3 |
7 |
26 |
252 |
5703 |
1968 |
|
SELEX cycle |
4 |
8 |
7584 |
7 |
5 |
0 |
|
Number of repeats |
dimeric |
9 |
7308 |
30 |
933 |
433 |
|
Comment |
|
10 |
7158 |
349 |
937 |
1116 |
|
Representative matrix |
yes |
11 |
6258 |
671 |
830 |
2520 |
|
|
|
12 |
6787 |
1566 |
1036 |
1724 |
|
|
|
13 |
7379 |
3 |
302 |
239 |
|
|
|
14 |
1978 |
914 |
6353 |
1298 |
|
|
|
15 |
8 |
12 |
7526 |
49 |
|
|
|
16 |
392 |
416 |
31 |
7267 |
|
|
|
17 |
5 |
0 |
7581 |
0 |
|
|
|
18 |
353 |
299 |
18 |
7570 |
|
Source: |
|
19 |
54 |
173 |
7545 |
1622 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
20 |
7565 |
26 |
32 |
7 |
|
|
|
|
|
|
|
|
|
|
|
|
TBX1_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX1 |
1 |
6440 |
21 |
152 |
177 |
|
TF group |
TBX |
2 |
734 |
49 |
10018 |
94 |
|
Polypeptide used |
DBD |
3 |
5 |
4 |
9639 |
8 |
|
Ligand sequence |
TACGGA40NGGC |
4 |
22 |
50 |
167 |
8767 |
|
Batch of SELEX experiment |
AI |
5 |
2 |
1 |
10319 |
0 |
|
Seed sequence |
AGGTGTGAAWTTCACACCT |
6 |
41 |
184 |
51 |
8790 |
|
Hamming distance of sequences to seed |
2 |
7 |
54 |
52 |
10256 |
74 |
|
SELEX cycle |
4 |
8 |
6441 |
1 |
12 |
0 |
|
Number of repeats |
dimeric |
9 |
6108 |
550 |
32 |
548 |
|
Comment |
|
10 |
2704 |
23 |
46 |
5169 |
|
Representative matrix |
no |
11 |
2694 |
46 |
171 |
6305 |
|
|
|
12 |
5 |
1 |
19 |
8744 |
|
|
|
13 |
193 |
6270 |
157 |
15 |
|
|
|
14 |
6163 |
30 |
280 |
99 |
|
|
|
15 |
2 |
6264 |
6 |
5 |
|
|
|
16 |
6551 |
22 |
30 |
0 |
|
|
|
17 |
4 |
6089 |
19 |
2 |
|
Source: |
|
18 |
28 |
5643 |
149 |
786 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
19 |
27 |
279 |
33 |
8877 |
|
|
|
|
|
|
|
|
|
|
|
|
TBX1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX1 |
1 |
11931 |
113 |
1007 |
564 |
|
TF group |
TBX |
2 |
1560 |
711 |
11931 |
669 |
|
Polypeptide used |
DBD |
3 |
0 |
0 |
11931 |
0 |
|
Ligand sequence |
TACGGA40NGGC |
4 |
28 |
214 |
141 |
11931 |
|
Batch of SELEX experiment |
AI |
5 |
0 |
5 |
11931 |
0 |
|
Seed sequence |
AGGTGTGA |
6 |
142 |
613 |
109 |
11931 |
|
Hamming distance of sequences to seed |
1 |
7 |
141 |
720 |
11931 |
1039 |
|
SELEX cycle |
4 |
8 |
11931 |
33 |
18 |
0 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
TBX1_d3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX1 |
1 |
229 |
1869 |
1253 |
9297 |
|
TF group |
TBX |
2 |
233 |
687 |
83 |
11232 |
|
Polypeptide used |
DBD |
3 |
0 |
0 |
11 |
11922 |
|
Ligand sequence |
TACGGA40NGGC |
4 |
874 |
7686 |
661 |
10 |
|
Batch of SELEX experiment |
AI |
5 |
8701 |
3 |
2626 |
1 |
|
Seed sequence |
TYTCACACCTNNNAGGTGTGARA |
6 |
14 |
8413 |
22 |
8 |
|
Hamming distance of sequences to seed |
2 |
7 |
8717 |
7 |
74 |
9 |
|
SELEX cycle |
4 |
8 |
5 |
8399 |
7 |
3 |
|
Number of repeats |
dimeric |
9 |
106 |
8270 |
4 |
641 |
|
Comment |
|
10 |
99 |
381 |
612 |
12029 |
|
Representative matrix |
no |
11 |
673 |
4775 |
684 |
3777 |
|
|
|
12 |
4794 |
458 |
504 |
4150 |
|
|
|
13 |
4062 |
351 |
6518 |
6 |
|
|
|
14 |
8908 |
44 |
47 |
8 |
|
|
|
15 |
613 |
99 |
9778 |
3981 |
|
|
|
16 |
3 |
0 |
13786 |
3 |
|
|
|
17 |
41 |
71 |
252 |
11972 |
|
|
|
18 |
7 |
5 |
13766 |
5 |
|
|
|
19 |
100 |
2654 |
33 |
8586 |
|
|
|
20 |
18 |
534 |
13241 |
335 |
|
Source: |
|
21 |
8949 |
104 |
20 |
12 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
22 |
4221 |
36 |
7128 |
460 |
|
|
|
|
|
|
|
|
|
|
|
|
TBX1_d4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TBX1 |
1 |
730 |
472 |
767 |
11227 |
|
TF group |
TBX |
2 |
9 |
7 |
56 |
12141 |
|
Polypeptide used |
DBD |
3 |
329 |
7981 |
573 |
4 |
|
Ligand sequence |
TACGGA40NGGC |
4 |
8622 |
2 |
178 |
216 |
|
Batch of SELEX experiment |
AI |
5 |
2 |
8154 |
20 |
3 |
|
Seed sequence |
YTCACACCTNNAGGTGTGAR |
6 |
8518 |
10 |
349 |
22 |
|
Hamming distance of sequences to seed |
2 |
7 |
8 |
8298 |
22 |
5 |
|
SELEX cycle |
4 |
8 |
1720 |
7767 |
108 |
636 |
|
Number of repeats |
dimeric |
9 |
182 |
484 |
296 |
11588 |
|
Comment |
|
10 |
3223 |
4316 |
1047 |
126 |
|
Representative matrix |
yes |
11 |
2692 |
2274 |
257 |
4777 |
|
|
|
12 |
7009 |
1799 |
794 |
83 |
|
|
|
13 |
542 |
2525 |
9882 |
210 |
|
|
|
14 |
6 |
82 |
13640 |
1 |
|
|
|
15 |
16 |
136 |
150 |
11750 |
|
|
|
16 |
0 |
0 |
13953 |
1 |
|
|
|
17 |
243 |
128 |
93 |
11623 |
|
|
|
18 |
6 |
135 |
13381 |
688 |
|
Source: |
|
19 |
8730 |
42 |
24 |
14 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
20 |
5372 |
97 |
4683 |
1455 |
|
|
|