|
Sox3_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Sox3 |
1 |
6205 |
1258 |
1565 |
812 |
|
TF group |
HMG |
2 |
9840 |
25 |
120 |
64 |
|
Polypeptide used |
DBD |
3 |
9840 |
6 |
110 |
17 |
|
Ligand sequence |
TGGGGT20NCG |
4 |
2 |
9840 |
0 |
15 |
|
Batch of SELEX experiment |
Q |
5 |
9840 |
2 |
1 |
8 |
|
Seed sequence |
NAACAATRNYATTGTTN |
6 |
9840 |
1 |
2 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
3 |
0 |
9840 |
|
SELEX cycle |
4 |
8 |
3721 |
11 |
6118 |
1306 |
|
Number of repeats |
dimeric |
9 |
4648 |
1491 |
1659 |
2042 |
|
Comment |
possible binding to single stranded DNA |
10 |
1162 |
5008 |
1 |
4832 |
|
Representative
matrix |
no |
11 |
9840 |
4 |
0 |
1 |
|
|
|
12 |
17 |
12 |
1162 |
9840 |
|
|
|
13 |
27 |
10 |
4 |
9840 |
|
|
|
14 |
12 |
12 |
9840 |
7 |
|
|
|
15 |
40 |
12 |
6 |
9840 |
|
Source: |
|
16 |
288 |
123 |
92 |
9840 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
1463 |
153 |
2263 |
5961 |
|
|
|
|
|
|
|
|
|
|
|
|
Sox3_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Sox3 |
1 |
113 |
459 |
623 |
282 |
|
TF group |
HMG |
2 |
1477 |
96 |
197 |
98 |
|
Polypeptide used |
DBD |
3 |
54 |
1 |
7 |
1477 |
|
Ligand sequence |
TGGGGT20NCG |
4 |
0 |
1477 |
2 |
10 |
|
Batch of SELEX experiment |
Q |
5 |
1477 |
0 |
1 |
0 |
|
Seed sequence |
NATCAATKNYATTGATN |
6 |
1477 |
0 |
1 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
1 |
0 |
1477 |
|
SELEX cycle |
4 |
8 |
0 |
0 |
1116 |
361 |
|
Number of repeats |
dimeric |
9 |
103 |
226 |
352 |
796 |
|
Comment |
possible binding to single stranded DNA |
10 |
1 |
492 |
1 |
985 |
|
Representative matrix |
no |
11 |
1477 |
0 |
0 |
0 |
|
|
|
12 |
2 |
0 |
370 |
1477 |
|
|
|
13 |
2 |
2 |
1 |
1477 |
|
|
|
14 |
2 |
1 |
1477 |
1 |
|
|
|
15 |
1477 |
2 |
52 |
25 |
|
Source: |
|
16 |
146 |
32 |
94 |
1477 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
338 |
120 |
418 |
602 |
|
|
|
|
|
|
|
|
|
|
|
|
Sox3_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Sox3 |
1 |
1057 |
427 |
2420 |
1848 |
|
TF group |
HMG |
2 |
5752 |
82 |
253 |
289 |
|
Polypeptide used |
DBD |
3 |
13 |
2 |
1 |
5752 |
|
Ligand sequence |
TGGGGT20NCG |
4 |
12 |
1 |
5752 |
0 |
|
Batch of SELEX experiment |
Q |
5 |
5752 |
1 |
4 |
2 |
|
Seed sequence |
NATGAATKNYATTCATN |
6 |
5752 |
2 |
3 |
2 |
|
Hamming distance of sequences to seed |
1 |
7 |
1 |
2 |
1 |
5752 |
|
SELEX cycle |
4 |
8 |
0 |
2 |
4032 |
1720 |
|
Number of repeats |
dimeric |
9 |
1153 |
1382 |
2155 |
1062 |
|
Comment |
possible binding to single stranded DNA |
10 |
1 |
2865 |
8 |
2887 |
|
Representative matrix |
yes |
11 |
5752 |
1 |
2 |
1 |
|
|
|
12 |
6 |
6 |
1365 |
5752 |
|
|
|
13 |
7 |
6 |
4 |
5752 |
|
|
|
14 |
4 |
5752 |
2 |
2 |
|
|
|
15 |
5752 |
4 |
4 |
4 |
|
Source: |
|
16 |
592 |
45 |
247 |
5752 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
2317 |
303 |
2402 |
729 |
|
|
|