|
SOX8_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX8 |
1 |
460 |
0 |
0 |
7 |
|
TF group |
HMG |
2 |
460 |
0 |
0 |
0 |
|
Polypeptide used |
DBD |
3 |
1 |
460 |
0 |
0 |
|
Ligand sequence |
TCTTTC30NTTG |
4 |
460 |
0 |
2 |
0 |
|
Batch of SELEX experiment |
AI |
5 |
460 |
1 |
1 |
1 |
|
Seed sequence |
AACAATRTKCAGWGTT |
6 |
0 |
0 |
1 |
460 |
|
Hamming distance of sequences to seed |
1 |
7 |
162 |
7 |
298 |
37 |
|
SELEX cycle |
4 |
8 |
1 |
0 |
0 |
460 |
|
Number of repeats |
dimeric |
9 |
30 |
41 |
371 |
89 |
|
Comment |
possible binding to single stranded DNA |
10 |
0 |
460 |
2 |
2 |
|
Representative matrix |
no |
11 |
460 |
0 |
0 |
0 |
|
|
|
12 |
1 |
0 |
460 |
2 |
|
|
|
13 |
0 |
0 |
1 |
460 |
|
|
|
14 |
0 |
0 |
460 |
0 |
|
Source: |
|
15 |
1 |
0 |
0 |
460 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
0 |
4 |
0 |
460 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX8_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX8 |
1 |
7808 |
372 |
1921 |
129 |
|
TF group |
HMG |
2 |
24 |
1 |
15 |
7808 |
|
Polypeptide used |
DBD |
3 |
17 |
8 |
7808 |
10 |
|
Ligand sequence |
TCTTTC30NTTG |
4 |
7808 |
4 |
12 |
2 |
|
Batch of SELEX experiment |
AI |
5 |
7808 |
4 |
28 |
11 |
|
Seed sequence |
ATGAATKNYAGTC |
6 |
5 |
4 |
17 |
7808 |
|
Hamming distance of sequences to seed |
1 |
7 |
9 |
4 |
1033 |
6775 |
|
SELEX cycle |
4 |
8 |
704 |
787 |
3298 |
3020 |
|
Number of repeats |
dimeric |
9 |
3 |
6878 |
16 |
930 |
|
Comment |
possible binding to single stranded DNA |
10 |
7808 |
7 |
13 |
1 |
|
Representative matrix |
no |
11 |
22 |
6 |
7808 |
826 |
|
|
|
12 |
10 |
13 |
25 |
7808 |
|
Source: |
|
13 |
2 |
7808 |
20 |
4 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
SOX8_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX8 |
1 |
2665 |
772 |
3843 |
1056 |
|
TF group |
HMG |
2 |
8336 |
6 |
36 |
5 |
|
Polypeptide used |
DBD |
3 |
8336 |
5 |
289 |
11 |
|
Ligand sequence |
TCTTTC30NTTG |
4 |
17 |
8336 |
22 |
5 |
|
Batch of SELEX experiment |
AI |
5 |
8336 |
13 |
15 |
4 |
|
Seed sequence |
NAACAATKNYAGTGTTN |
6 |
8336 |
8 |
78 |
5 |
|
Hamming distance of sequences to seed |
1 |
7 |
2 |
2 |
2 |
8336 |
|
SELEX cycle |
4 |
8 |
6 |
3 |
988 |
7348 |
|
Number of repeats |
dimeric |
9 |
810 |
878 |
4025 |
2622 |
|
Comment |
possible binding to single stranded DNA |
10 |
11 |
7417 |
18 |
919 |
|
Representative matrix |
no |
11 |
8336 |
7 |
18 |
3 |
|
|
|
12 |
1 |
0 |
8336 |
141 |
|
|
|
13 |
6 |
5 |
29 |
8336 |
|
|
|
14 |
2 |
1 |
8336 |
2 |
|
|
|
15 |
2 |
0 |
19 |
8336 |
|
Source: |
|
16 |
25 |
69 |
23 |
8336 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
1515 |
3082 |
1141 |
2598 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX8_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX8 |
1 |
536 |
1214 |
76 |
453 |
|
TF group |
HMG |
2 |
2279 |
0 |
6 |
2 |
|
Polypeptide used |
DBD |
3 |
2 |
0 |
5 |
2279 |
|
Ligand sequence |
TCTTTC30NTTG |
4 |
0 |
2279 |
20 |
1 |
|
Batch of SELEX experiment |
AI |
5 |
2279 |
4 |
6 |
2 |
|
Seed sequence |
NATCAATKNYAGTGATN |
6 |
2279 |
0 |
8 |
1 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
0 |
1 |
2279 |
|
SELEX cycle |
4 |
8 |
1 |
0 |
470 |
1809 |
|
Number of repeats |
dimeric |
9 |
293 |
101 |
1422 |
462 |
|
Comment |
possible binding to single stranded DNA |
10 |
6 |
1810 |
4 |
469 |
|
Representative matrix |
no |
11 |
2279 |
0 |
2 |
1 |
|
|
|
12 |
2 |
1 |
2279 |
107 |
|
|
|
13 |
3 |
0 |
4 |
2279 |
|
|
|
14 |
0 |
7 |
2279 |
1 |
|
|
|
15 |
2279 |
0 |
2 |
11 |
|
Source: |
|
16 |
35 |
1 |
21 |
2279 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
533 |
827 |
346 |
573 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX8_5 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX8 |
1 |
0 |
0 |
4 |
998 |
|
TF group |
HMG |
2 |
4 |
0 |
998 |
1 |
|
Polypeptide used |
DBD |
3 |
998 |
1 |
1 |
1 |
|
Ligand sequence |
TCTTTC30NTTG |
4 |
998 |
0 |
2 |
0 |
|
Batch of SELEX experiment |
AI |
5 |
1 |
0 |
0 |
998 |
|
Seed sequence |
TGAATRTKCAGWCA |
6 |
319 |
4 |
679 |
5 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
0 |
12 |
998 |
|
SELEX cycle |
4 |
8 |
83 |
76 |
635 |
364 |
|
Number of repeats |
dimeric |
9 |
2 |
998 |
2 |
0 |
|
Comment |
possible binding to single stranded DNA |
10 |
998 |
1 |
1 |
0 |
|
Representative matrix |
no |
11 |
0 |
0 |
998 |
8 |
|
|
|
12 |
1 |
2 |
2 |
997 |
|
Source: |
|
13 |
0 |
998 |
1 |
5 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
998 |
0 |
1 |
1 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX8_6 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX8 |
1 |
456 |
0 |
5 |
0 |
|
TF group |
HMG |
2 |
456 |
0 |
22 |
0 |
|
Polypeptide used |
full |
3 |
0 |
456 |
0 |
0 |
|
Ligand sequence |
TGTCTA20NTCG |
4 |
456 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AE |
5 |
456 |
0 |
0 |
0 |
|
Seed sequence |
AACAATKNYAGTGTT |
6 |
0 |
0 |
0 |
456 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
0 |
15 |
441 |
|
SELEX cycle |
4 |
8 |
88 |
51 |
252 |
65 |
|
Number of repeats |
dimeric |
9 |
0 |
441 |
0 |
15 |
|
Comment |
possible binding to single stranded DNA |
10 |
456 |
0 |
0 |
0 |
|
Representative
matrix |
no |
11 |
0 |
0 |
456 |
0 |
|
|
|
12 |
0 |
0 |
0 |
456 |
|
|
|
13 |
0 |
0 |
456 |
0 |
|
Source: |
|
14 |
0 |
0 |
0 |
456 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
0 |
0 |
0 |
456 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX8_7 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX8 |
1 |
619 |
0 |
112 |
5 |
|
TF group |
HMG |
2 |
5 |
0 |
0 |
619 |
|
Polypeptide used |
full |
3 |
0 |
0 |
619 |
0 |
|
Ligand sequence |
TGTCTA20NTCG |
4 |
619 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AE |
5 |
619 |
0 |
0 |
0 |
|
Seed sequence |
ATGAATKNYAGTC |
6 |
0 |
0 |
0 |
619 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
0 |
98 |
521 |
|
SELEX cycle |
4 |
8 |
55 |
72 |
331 |
162 |
|
Number of repeats |
dimeric |
9 |
0 |
516 |
0 |
104 |
|
Comment |
possible binding to single stranded DNA |
10 |
619 |
0 |
0 |
0 |
|
Representative matrix |
no |
11 |
0 |
0 |
619 |
68 |
|
|
|
12 |
0 |
0 |
0 |
619 |
|
Source: |
|
13 |
0 |
619 |
0 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
SOX8_8 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX8 |
1 |
121 |
64 |
0 |
15 |
|
TF group |
HMG |
2 |
200 |
0 |
0 |
0 |
|
Polypeptide used |
full |
3 |
0 |
0 |
0 |
200 |
|
Ligand sequence |
TGTCTA20NTCG |
4 |
0 |
200 |
0 |
0 |
|
Batch of SELEX experiment |
AE |
5 |
200 |
0 |
0 |
0 |
|
Seed sequence |
NATCAATKNYAGTGATN |
6 |
200 |
0 |
0 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
0 |
0 |
200 |
|
SELEX cycle |
4 |
8 |
0 |
0 |
47 |
152 |
|
Number of repeats |
dimeric |
9 |
6 |
0 |
169 |
25 |
|
Comment |
possible binding to single stranded DNA |
10 |
0 |
164 |
0 |
36 |
|
Representative
matrix |
no |
11 |
200 |
0 |
0 |
0 |
|
|
|
12 |
0 |
0 |
200 |
32 |
|
|
|
13 |
0 |
0 |
0 |
200 |
|
|
|
14 |
0 |
0 |
200 |
0 |
|
|
|
15 |
200 |
0 |
0 |
0 |
|
Source: |
|
16 |
6 |
0 |
0 |
200 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
6 |
0 |
71 |
123 |
|
|
|