|
SOX7_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX7 |
1 |
282 |
1 |
1 |
0 |
|
TF group |
HMG |
2 |
282 |
1 |
0 |
0 |
|
Polypeptide used |
full |
3 |
1 |
282 |
0 |
0 |
|
Ligand sequence |
TGAGGC20NGGA |
4 |
282 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
282 |
0 |
12 |
1 |
|
Seed sequence |
AACAATNNNNAKTGTT |
6 |
0 |
1 |
0 |
282 |
|
Hamming distance of sequences to seed |
1 |
7 |
103 |
5 |
129 |
45 |
|
SELEX cycle |
3 |
8 |
74 |
11 |
44 |
153 |
|
Number of repeats |
dimeric |
9 |
48 |
51 |
79 |
104 |
|
Comment |
possible binding to single stranded DNA |
10 |
55 |
164 |
5 |
58 |
|
Representative matrix |
yes |
11 |
282 |
0 |
0 |
1 |
|
|
|
12 |
1 |
0 |
105 |
177 |
|
|
|
13 |
2 |
0 |
0 |
282 |
|
|
|
14 |
1 |
0 |
282 |
0 |
|
Source: |
|
15 |
1 |
1 |
1 |
282 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
2 |
2 |
2 |
282 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX7_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX7 |
1 |
1665 |
252 |
840 |
499 |
|
TF group |
HMG |
2 |
3256 |
0 |
4 |
2 |
|
Polypeptide used |
full |
3 |
3256 |
0 |
7 |
1 |
|
Ligand sequence |
TGAGGC20NGGA |
4 |
1 |
3256 |
0 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
3256 |
0 |
0 |
0 |
|
Seed sequence |
NAACAATKNYAKTGTTN |
6 |
3256 |
2 |
37 |
1 |
|
Hamming distance of sequences to seed |
1 |
7 |
1 |
2 |
0 |
3256 |
|
SELEX cycle |
3 |
8 |
105 |
8 |
1282 |
1974 |
|
Number of repeats |
dimeric |
9 |
767 |
205 |
1160 |
1124 |
|
Comment |
possible binding to single stranded DNA |
10 |
2 |
2082 |
5 |
1175 |
|
Representative matrix |
no |
11 |
3256 |
0 |
0 |
2 |
|
|
|
12 |
0 |
1 |
1543 |
1713 |
|
|
|
13 |
5 |
1 |
11 |
3256 |
|
|
|
14 |
1 |
0 |
3256 |
1 |
|
|
|
15 |
4 |
3 |
3 |
3256 |
|
Source: |
|
16 |
19 |
34 |
11 |
3256 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
683 |
660 |
542 |
1372 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX7_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX7 |
1 |
52 |
35 |
69 |
53 |
|
TF group |
HMG |
2 |
210 |
0 |
4 |
4 |
|
Polypeptide used |
full |
3 |
1 |
0 |
0 |
210 |
|
Ligand sequence |
TGAGGC20NGGA |
4 |
12 |
0 |
210 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
210 |
0 |
0 |
1 |
|
Seed sequence |
NATGAATKNYAKTCATN |
6 |
210 |
0 |
3 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
1 |
0 |
210 |
|
SELEX cycle |
3 |
8 |
4 |
0 |
52 |
158 |
|
Number of repeats |
dimeric |
9 |
34 |
16 |
72 |
87 |
|
Comment |
possible binding to single stranded DNA |
10 |
0 |
158 |
0 |
52 |
|
Representative
matrix |
no |
11 |
210 |
0 |
0 |
0 |
|
|
|
12 |
0 |
0 |
113 |
97 |
|
|
|
13 |
0 |
0 |
0 |
210 |
|
|
|
14 |
0 |
210 |
0 |
0 |
|
|
|
15 |
210 |
0 |
0 |
2 |
|
Source: |
|
16 |
14 |
2 |
2 |
210 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
64 |
32 |
67 |
47 |
|
|
|