|
SOX2_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX2 |
1 |
1331 |
329 |
2564 |
789 |
|
TF group |
HMG |
2 |
5014 |
18 |
92 |
37 |
|
Polypeptide used |
DBD |
3 |
5014 |
200 |
43 |
15 |
|
Ligand sequence |
TAGTAA20NATT |
4 |
0 |
5014 |
0 |
13 |
|
Batch of SELEX experiment |
AC |
5 |
5014 |
0 |
0 |
0 |
|
Seed sequence |
NAACAATNNNATTGTTN |
6 |
5014 |
15 |
0 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
3 |
0 |
5014 |
|
SELEX cycle |
4 |
8 |
282 |
11 |
4132 |
589 |
|
Number of repeats |
dimeric |
9 |
673 |
410 |
2248 |
1682 |
|
Comment |
possible binding to single stranded DNA |
10 |
215 |
1515 |
14 |
3269 |
|
Representative matrix |
no |
11 |
5014 |
4 |
0 |
3 |
|
|
|
12 |
4 |
5 |
2321 |
5014 |
|
|
|
13 |
87 |
3 |
3 |
5014 |
|
|
|
14 |
0 |
3 |
5014 |
0 |
|
|
|
15 |
39 |
3 |
49 |
5014 |
|
Source: |
|
16 |
127 |
214 |
174 |
5014 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
1302 |
1838 |
1034 |
839 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX2_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX2 |
1 |
7055 |
2944 |
3078 |
1412 |
|
TF group |
HMG |
2 |
237 |
40 |
67 |
14489 |
|
Polypeptide used |
DBD |
3 |
109 |
3 |
14489 |
0 |
|
Ligand sequence |
TAGTAA20NATT |
4 |
14489 |
3 |
2 |
4 |
|
Batch of SELEX experiment |
AC |
5 |
14489 |
65 |
11 |
1 |
|
Seed sequence |
NTGAATNNNATTCAN |
6 |
1 |
4 |
0 |
14489 |
|
Hamming distance of sequences to seed |
1 |
7 |
1126 |
2 |
11454 |
1907 |
|
SELEX cycle |
4 |
8 |
1927 |
1664 |
4756 |
6141 |
|
Number of repeats |
dimeric |
9 |
435 |
4433 |
45 |
9576 |
|
Comment |
possible binding to single stranded DNA |
10 |
14489 |
8 |
4 |
2 |
|
Representative matrix |
no |
11 |
7 |
10 |
3146 |
14489 |
|
|
|
12 |
4 |
5 |
0 |
14489 |
|
|
|
13 |
0 |
14489 |
0 |
7 |
|
Source: |
|
14 |
14489 |
24 |
26 |
48 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
2465 |
2393 |
4052 |
5579 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX2_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX2 |
1 |
105 |
62 |
131 |
54 |
|
TF group |
HMG |
2 |
352 |
17 |
56 |
17 |
|
Polypeptide used |
DBD |
3 |
7 |
2 |
7 |
352 |
|
Ligand sequence |
TCCCCT20NCCC |
4 |
0 |
352 |
0 |
0 |
|
Batch of SELEX experiment |
AC |
5 |
352 |
0 |
0 |
0 |
|
Seed sequence |
NATCAATNNNATTGATN |
6 |
352 |
0 |
0 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
0 |
0 |
352 |
|
SELEX cycle |
4 |
8 |
19 |
0 |
296 |
38 |
|
Number of repeats |
dimeric |
9 |
49 |
55 |
115 |
132 |
|
Comment |
possible binding to single stranded DNA |
10 |
34 |
98 |
0 |
220 |
|
Representative matrix |
no |
11 |
352 |
0 |
0 |
0 |
|
|
|
12 |
0 |
0 |
85 |
352 |
|
|
|
13 |
0 |
0 |
0 |
352 |
|
|
|
14 |
0 |
0 |
352 |
0 |
|
|
|
15 |
352 |
0 |
5 |
23 |
|
Source: |
|
16 |
102 |
20 |
66 |
352 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
114 |
20 |
150 |
67 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX2_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX2 |
1 |
72 |
108 |
146 |
103 |
|
TF group |
HMG |
2 |
430 |
20 |
8 |
5 |
|
Polypeptide used |
full |
3 |
430 |
6 |
0 |
1 |
|
Ligand sequence |
TGAATA20NTAA |
4 |
0 |
430 |
0 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
430 |
0 |
0 |
1 |
|
Seed sequence |
NAACAATANCATTGTTN |
6 |
430 |
131 |
0 |
2 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
0 |
0 |
430 |
|
SELEX cycle |
4 |
8 |
430 |
0 |
90 |
83 |
|
Number of repeats |
dimeric |
9 |
172 |
105 |
87 |
66 |
|
Comment |
possible binding to single stranded DNA |
10 |
0 |
430 |
0 |
0 |
|
Representative
matrix |
no |
11 |
430 |
0 |
0 |
0 |
|
|
|
12 |
0 |
0 |
0 |
430 |
|
|
|
13 |
0 |
0 |
0 |
430 |
|
|
|
14 |
2 |
0 |
430 |
2 |
|
|
|
15 |
2 |
8 |
3 |
430 |
|
Source: |
|
16 |
6 |
7 |
9 |
430 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
81 |
207 |
45 |
97 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX2_5 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX2 |
1 |
21 |
25 |
3 |
35 |
|
TF group |
HMG |
2 |
85 |
15 |
2 |
5 |
|
Polypeptide used |
full |
3 |
2 |
6 |
0 |
85 |
|
Ligand sequence |
TGAATA20NTAA |
4 |
0 |
85 |
2 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
85 |
0 |
0 |
0 |
|
Seed sequence |
NATCAATANCATTGATN |
6 |
85 |
21 |
0 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
0 |
0 |
85 |
|
SELEX cycle |
4 |
8 |
85 |
0 |
1 |
15 |
|
Number of repeats |
dimeric |
9 |
35 |
25 |
14 |
11 |
|
Comment |
possible binding to single stranded DNA; < 100
counts |
10 |
0 |
85 |
0 |
4 |
|
Representative matrix |
no |
11 |
85 |
0 |
0 |
0 |
|
|
|
12 |
0 |
0 |
0 |
85 |
|
|
|
13 |
0 |
0 |
0 |
85 |
|
|
|
14 |
0 |
0 |
85 |
0 |
|
|
|
15 |
85 |
0 |
0 |
1 |
|
Source: |
|
16 |
1 |
6 |
4 |
85 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
36 |
29 |
3 |
17 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX2_6 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX2 |
1 |
467 |
99 |
247 |
188 |
|
TF group |
HMG |
2 |
8 |
2 |
8 |
1001 |
|
Polypeptide used |
full |
3 |
6 |
2 |
1001 |
2 |
|
Ligand sequence |
TGAATA20NTAA |
4 |
1001 |
0 |
0 |
3 |
|
Batch of SELEX experiment |
AF |
5 |
1001 |
123 |
0 |
2 |
|
Seed sequence |
NTGAATWNCATTCAN |
6 |
0 |
0 |
0 |
1001 |
|
Hamming distance of sequences to seed |
1 |
7 |
721 |
13 |
191 |
280 |
|
SELEX cycle |
4 |
8 |
361 |
255 |
179 |
206 |
|
Number of repeats |
dimeric |
9 |
6 |
1001 |
2 |
0 |
|
Comment |
possible binding to single stranded DNA |
10 |
1001 |
2 |
0 |
0 |
|
Representative
matrix |
no |
11 |
0 |
1 |
130 |
1001 |
|
|
|
12 |
0 |
0 |
0 |
1001 |
|
|
|
13 |
0 |
1001 |
2 |
3 |
|
Source: |
|
14 |
1001 |
16 |
6 |
16 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
155 |
227 |
102 |
517 |
|
|
|