|
SOX18_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX18 |
1 |
2532 |
13 |
46 |
0 |
|
TF group |
HMG |
2 |
2532 |
0 |
24 |
5 |
|
Polypeptide used |
full |
3 |
0 |
2532 |
0 |
0 |
|
Ligand sequence |
TGTGTC20NTGG |
4 |
2532 |
7 |
0 |
0 |
|
Batch of SELEX experiment |
AE |
5 |
2532 |
71 |
21 |
0 |
|
Seed sequence |
AACAATNNCATTGTT |
6 |
0 |
0 |
0 |
2532 |
|
Hamming distance of sequences to seed |
1 |
7 |
596 |
59 |
525 |
1352 |
|
SELEX cycle |
4 |
8 |
418 |
367 |
861 |
886 |
|
Number of repeats |
dimeric |
9 |
85 |
2532 |
16 |
67 |
|
Comment |
possible binding to single stranded DNA |
10 |
2532 |
0 |
0 |
8 |
|
Representative
matrix |
no |
11 |
8 |
0 |
284 |
2532 |
|
|
|
12 |
8 |
0 |
8 |
2532 |
|
|
|
13 |
0 |
0 |
2532 |
0 |
|
Source: |
|
14 |
8 |
0 |
6 |
2532 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
20 |
32 |
32 |
2532 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX18_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX18 |
1 |
298 |
14 |
31 |
6 |
|
TF group |
HMG |
2 |
8 |
0 |
0 |
298 |
|
Polypeptide used |
full |
3 |
0 |
298 |
0 |
0 |
|
Ligand sequence |
TGTGTC20NTGG |
4 |
298 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AE |
5 |
298 |
0 |
0 |
0 |
|
Seed sequence |
ATCAATNNCATTGAT |
6 |
0 |
0 |
0 |
298 |
|
Hamming distance of sequences to seed |
1 |
7 |
96 |
7 |
15 |
180 |
|
SELEX cycle |
4 |
8 |
51 |
36 |
132 |
78 |
|
Number of repeats |
dimeric |
9 |
0 |
298 |
0 |
15 |
|
Comment |
possible binding to single stranded DNA |
10 |
298 |
0 |
0 |
0 |
|
Representative matrix |
yes |
11 |
0 |
0 |
44 |
298 |
|
|
|
12 |
0 |
0 |
0 |
298 |
|
|
|
13 |
0 |
0 |
298 |
0 |
|
Source: |
|
14 |
298 |
0 |
6 |
5 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
13 |
0 |
8 |
298 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX18_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX18 |
1 |
499 |
0 |
0 |
12 |
|
TF group |
HMG |
2 |
8 |
0 |
0 |
499 |
|
Polypeptide used |
full |
3 |
16 |
0 |
499 |
0 |
|
Ligand sequence |
TGTGTC20NTGG |
4 |
499 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AE |
5 |
499 |
8 |
8 |
0 |
|
Seed sequence |
ATGAATWYCATTCAT |
6 |
0 |
0 |
0 |
499 |
|
Hamming distance of sequences to seed |
1 |
7 |
144 |
0 |
54 |
355 |
|
SELEX cycle |
4 |
8 |
42 |
290 |
66 |
209 |
|
Number of repeats |
dimeric |
9 |
0 |
499 |
0 |
12 |
|
Comment |
possible binding to single stranded DNA |
10 |
499 |
0 |
0 |
0 |
|
Representative
matrix |
no |
11 |
0 |
0 |
47 |
499 |
|
|
|
12 |
0 |
0 |
0 |
499 |
|
|
|
13 |
0 |
499 |
0 |
0 |
|
Source: |
|
14 |
499 |
0 |
8 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
27 |
0 |
0 |
499 |
|
|
|