|
SOX10_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX10 |
1 |
6399 |
10 |
3 |
3 |
|
TF group |
HMG |
2 |
6399 |
2 |
89 |
0 |
|
Polypeptide used |
full |
3 |
5 |
6399 |
3 |
0 |
|
Ligand sequence |
TGATTT20NTTA |
4 |
6399 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
6399 |
3 |
0 |
0 |
|
Seed sequence |
AACAATNNNAGTGTT |
6 |
0 |
3 |
0 |
6399 |
|
Hamming distance of sequences to seed |
1 |
7 |
3 |
0 |
1085 |
5311 |
|
SELEX cycle |
4 |
8 |
218 |
474 |
3710 |
1996 |
|
Number of repeats |
dimeric |
9 |
2 |
5339 |
2 |
1056 |
|
Comment |
possible binding to single stranded DNA |
10 |
6399 |
0 |
0 |
0 |
|
Representative matrix |
no |
11 |
2 |
0 |
6399 |
6 |
|
|
|
12 |
3 |
5 |
2 |
6399 |
|
|
|
13 |
3 |
0 |
6399 |
0 |
|
Source: |
|
14 |
0 |
0 |
0 |
6399 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
5 |
27 |
0 |
6399 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX10_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX10 |
1 |
282 |
0 |
0 |
0 |
|
TF group |
HMG |
2 |
282 |
0 |
0 |
0 |
|
Polypeptide used |
full |
3 |
0 |
282 |
0 |
0 |
|
Ligand sequence |
TGATTT20NTTA |
4 |
282 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
282 |
3 |
0 |
0 |
|
Seed sequence |
AACAATRTKCAGWGTT |
6 |
0 |
0 |
0 |
282 |
|
Hamming distance of sequences to seed |
1 |
7 |
92 |
0 |
190 |
0 |
|
SELEX cycle |
4 |
8 |
0 |
0 |
0 |
282 |
|
Number of repeats |
dimeric |
9 |
0 |
15 |
132 |
150 |
|
Comment |
possible binding to single stranded DNA |
10 |
0 |
282 |
0 |
0 |
|
Representative matrix |
yes |
11 |
282 |
0 |
0 |
0 |
|
|
|
12 |
0 |
0 |
282 |
0 |
|
|
|
13 |
0 |
0 |
0 |
282 |
|
|
|
14 |
0 |
0 |
282 |
0 |
|
Source: |
|
15 |
0 |
0 |
0 |
282 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
0 |
0 |
3 |
282 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX10_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX10 |
1 |
786 |
0 |
0 |
0 |
|
TF group |
HMG |
2 |
0 |
0 |
0 |
786 |
|
Polypeptide used |
full |
3 |
0 |
786 |
0 |
3 |
|
Ligand sequence |
TGATTT20NTTA |
4 |
786 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
786 |
0 |
0 |
0 |
|
Seed sequence |
ATCAATTGCAGTGAT |
6 |
0 |
0 |
0 |
786 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
0 |
21 |
786 |
|
SELEX cycle |
4 |
8 |
112 |
149 |
786 |
558 |
|
Number of repeats |
dimeric |
9 |
0 |
786 |
0 |
35 |
|
Comment |
possible binding to single stranded DNA |
10 |
786 |
0 |
0 |
0 |
|
Representative matrix |
no |
11 |
0 |
0 |
786 |
10 |
|
|
|
12 |
0 |
0 |
0 |
786 |
|
|
|
13 |
0 |
3 |
786 |
0 |
|
Source: |
|
14 |
786 |
0 |
0 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
0 |
0 |
0 |
786 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX10_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX10 |
1 |
4390 |
13 |
5 |
10 |
|
TF group |
HMG |
2 |
0 |
3 |
0 |
4390 |
|
Polypeptide used |
full |
3 |
5 |
3 |
4390 |
3 |
|
Ligand sequence |
TGATTT20NTTA |
4 |
4390 |
5 |
3 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
4390 |
0 |
8 |
0 |
|
Seed sequence |
ATGAATTGCAGTCAT |
6 |
0 |
0 |
0 |
4390 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
3 |
31 |
4390 |
|
SELEX cycle |
4 |
8 |
595 |
295 |
4390 |
1990 |
|
Number of repeats |
dimeric |
9 |
3 |
4390 |
0 |
24 |
|
Comment |
possible binding to single stranded DNA |
10 |
4390 |
0 |
3 |
0 |
|
Representative matrix |
no |
11 |
0 |
0 |
4390 |
10 |
|
|
|
12 |
0 |
0 |
0 |
4390 |
|
|
|
13 |
0 |
4390 |
0 |
3 |
|
Source: |
|
14 |
4390 |
0 |
3 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
2 |
0 |
19 |
4390 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX10_5 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX10 |
1 |
0 |
0 |
0 |
701 |
|
TF group |
HMG |
2 |
0 |
3 |
701 |
0 |
|
Polypeptide used |
full |
3 |
701 |
0 |
0 |
0 |
|
Ligand sequence |
TGATTT20NTTA |
4 |
701 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
0 |
0 |
0 |
701 |
|
Seed sequence |
TGAATRTKCAGTCA |
6 |
167 |
0 |
533 |
6 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
0 |
0 |
701 |
|
SELEX cycle |
4 |
8 |
12 |
15 |
258 |
442 |
|
Number of repeats |
dimeric |
9 |
0 |
701 |
0 |
0 |
|
Comment |
possible binding to single stranded DNA |
10 |
701 |
0 |
0 |
0 |
|
Representative matrix |
yes |
11 |
0 |
0 |
701 |
7 |
|
|
|
12 |
0 |
0 |
0 |
701 |
|
Source: |
|
13 |
0 |
701 |
0 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
701 |
5 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
Sox10_6 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Sox10 |
1 |
963 |
0 |
2 |
0 |
|
TF group |
HMG |
2 |
963 |
0 |
0 |
0 |
|
Polypeptide used |
DBD |
3 |
0 |
963 |
0 |
0 |
|
Ligand sequence |
TGCTGT20NCG |
4 |
963 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
P |
5 |
963 |
0 |
38 |
0 |
|
Seed sequence |
AACAATTGCAGTGTT |
6 |
0 |
0 |
0 |
963 |
|
Hamming distance of sequences to seed |
1 |
7 |
3 |
0 |
1 |
963 |
|
SELEX cycle |
4 |
8 |
343 |
397 |
963 |
1374 |
|
Number of repeats |
dimeric |
9 |
0 |
963 |
0 |
0 |
|
Comment |
possible binding to single stranded DNA |
10 |
963 |
0 |
1 |
0 |
|
Representative
matrix |
no |
11 |
5 |
0 |
963 |
134 |
|
|
|
12 |
1 |
1 |
1 |
963 |
|
|
|
13 |
0 |
1 |
963 |
0 |
|
Source: |
|
14 |
0 |
0 |
0 |
963 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
2 |
83 |
8 |
963 |
|
|
|
|
|
|
|
|
|
|
|
|
Sox10_7 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Sox10 |
1 |
2933 |
0 |
1 |
0 |
|
TF group |
HMG |
2 |
0 |
0 |
0 |
2933 |
|
Polypeptide used |
DBD |
3 |
0 |
2933 |
0 |
0 |
|
Ligand sequence |
TGCTGT20NCG |
4 |
2933 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
P |
5 |
2933 |
0 |
0 |
0 |
|
Seed sequence |
ATCAATTGCAGTGAT |
6 |
0 |
0 |
0 |
2933 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
1 |
23 |
2933 |
|
SELEX cycle |
4 |
8 |
544 |
19 |
2933 |
1106 |
|
Number of repeats |
dimeric |
9 |
0 |
2933 |
0 |
0 |
|
Comment |
possible binding to single stranded DNA |
10 |
2933 |
1 |
1 |
0 |
|
Representative matrix |
no |
11 |
0 |
1 |
2933 |
22 |
|
|
|
12 |
1 |
3 |
1 |
2933 |
|
|
|
13 |
1 |
0 |
2933 |
0 |
|
Source: |
|
14 |
2933 |
1 |
2 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
4 |
7 |
8 |
2933 |
|
|
|
|
|
|
|
|
|
|
|
|
Sox10_8 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Sox10 |
1 |
1138 |
1 |
4 |
0 |
|
TF group |
HMG |
2 |
0 |
0 |
0 |
1138 |
|
Polypeptide used |
DBD |
3 |
0 |
0 |
1138 |
0 |
|
Ligand sequence |
TGCTGT20NCG |
4 |
1138 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
P |
5 |
1138 |
0 |
0 |
0 |
|
Seed sequence |
ATGAATTGCAGTCAT |
6 |
0 |
0 |
0 |
1138 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
1 |
10 |
1138 |
|
SELEX cycle |
4 |
8 |
603 |
115 |
1138 |
1010 |
|
Number of repeats |
dimeric |
9 |
0 |
1138 |
0 |
0 |
|
Comment |
possible binding to single stranded DNA |
10 |
1138 |
0 |
0 |
0 |
|
Representative
matrix |
no |
11 |
0 |
0 |
1138 |
4 |
|
|
|
12 |
0 |
3 |
0 |
1138 |
|
|
|
13 |
0 |
1138 |
0 |
0 |
|
Source: |
|
14 |
1138 |
0 |
0 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
38 |
0 |
0 |
1138 |
|
|
|