|
RORA_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RORA |
1 |
1160 |
2362 |
1433 |
972 |
|
TF group |
nuclearreceptor |
2 |
4246 |
1157 |
777 |
498 |
|
Polypeptide used |
DBD |
3 |
4078 |
222 |
2211 |
507 |
|
Ligand sequence |
TCTGTA30NTGG |
4 |
5388 |
2 |
180 |
0 |
|
Batch of SELEX experiment |
AI |
5 |
0 |
2 |
7033 |
6 |
|
Seed sequence |
NRAAGGTCAANNNNRGGTCA |
6 |
6 |
0 |
6983 |
12 |
|
Hamming distance of sequences to seed |
2 |
7 |
16 |
11 |
45 |
5847 |
|
SELEX cycle |
4 |
8 |
1 |
5908 |
16 |
3 |
|
Number of repeats |
dimeric |
9 |
5209 |
9 |
21 |
6 |
|
Comment |
|
10 |
4707 |
579 |
197 |
426 |
|
Representative matrix |
no |
11 |
2652 |
1514 |
870 |
440 |
|
|
|
12 |
613 |
1005 |
455 |
3821 |
|
|
|
13 |
835 |
1699 |
402 |
2963 |
|
|
|
14 |
1229 |
1434 |
2991 |
619 |
|
|
|
15 |
4296 |
11 |
1068 |
4 |
|
|
|
16 |
0 |
2 |
6965 |
9 |
|
|
|
17 |
0 |
4 |
6758 |
0 |
|
|
|
18 |
13 |
7 |
43 |
6027 |
|
Source: |
|
19 |
46 |
6078 |
10 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
20 |
5157 |
5 |
27 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
RORA_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RORA |
1 |
1519 |
224 |
533 |
4030 |
|
TF group |
nuclearreceptor |
2 |
6645 |
79 |
13 |
220 |
|
Polypeptide used |
DBD |
3 |
3135 |
16 |
9 |
2661 |
|
Ligand sequence |
TCTGTA30NTGG |
4 |
648 |
4408 |
2118 |
754 |
|
Batch of SELEX experiment |
AI |
5 |
2 |
15 |
47 |
6289 |
|
Seed sequence |
WAWNTRGGTYAGTAGGTCA |
6 |
5242 |
15 |
2421 |
4 |
|
Hamming distance of sequences to seed |
2 |
7 |
3 |
4 |
7375 |
33 |
|
SELEX cycle |
4 |
8 |
0 |
3 |
7336 |
2 |
|
Number of repeats |
dimeric |
9 |
3 |
180 |
124 |
6080 |
|
Comment |
|
10 |
64 |
3102 |
19 |
3346 |
|
Representative matrix |
yes |
11 |
7067 |
17 |
15 |
8 |
|
|
|
12 |
152 |
1883 |
5544 |
405 |
|
|
|
13 |
8 |
119 |
157 |
6549 |
|
|
|
14 |
6727 |
9 |
220 |
10 |
|
|
|
15 |
4 |
7 |
7375 |
33 |
|
|
|
16 |
2 |
19 |
7101 |
5 |
|
|
|
17 |
23 |
84 |
73 |
6352 |
|
Source: |
|
18 |
5 |
7802 |
7 |
62 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
19 |
6562 |
0 |
200 |
4 |
|
|
|