RORA_1

 

 

 

 

A

C

G

T

 

Name

RORA

1

1160

2362

1433

972

 

TF group

nuclearreceptor

2

4246

1157

777

498

 

Polypeptide used

DBD

3

4078

222

2211

507

 

Ligand sequence

TCTGTA30NTGG

4

5388

2

180

0

 

Batch of SELEX experiment

AI

5

0

2

7033

6

 

Seed sequence

NRAAGGTCAANNNNRGGTCA

6

6

0

6983

12

 

Hamming distance of sequences to seed

2

7

16

11

45

5847

 

SELEX cycle

4

8

1

5908

16

3

 

Number of repeats

dimeric

9

5209

9

21

6

 

Comment

 

10

4707

579

197

426

 

Representative matrix

no

11

2652

1514

870

440

 

 

 

12

613

1005

455

3821

 

 

 

13

835

1699

402

2963

 

 

 

14

1229

1434

2991

619

 

 

 

15

4296

11

1068

4

 

 

 

16

0

2

6965

9

 

 

 

17

0

4

6758

0

 

 

 

18

13

7

43

6027

 

Source:

 

19

46

6078

10

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

20

5157

5

27

0

 

 

 

 

 

 

 

 

 

 

 

 

RORA_2

 

 

 

 

A

C

G

T

 

Name

RORA

1

1519

224

533

4030

 

TF group

nuclearreceptor

2

6645

79

13

220

 

Polypeptide used

DBD

3

3135

16

9

2661

 

Ligand sequence

TCTGTA30NTGG

4

648

4408

2118

754

 

Batch of SELEX experiment

AI

5

2

15

47

6289

 

Seed sequence

WAWNTRGGTYAGTAGGTCA

6

5242

15

2421

4

 

Hamming distance of sequences to seed

2

7

3

4

7375

33

 

SELEX cycle

4

8

0

3

7336

2

 

Number of repeats

dimeric

9

3

180

124

6080

 

Comment

 

10

64

3102

19

3346

 

Representative matrix

yes

11

7067

17

15

8

 

 

 

12

152

1883

5544

405

 

 

 

13

8

119

157

6549

 

 

 

14

6727

9

220

10

 

 

 

15

4

7

7375

33

 

 

 

16

2

19

7101

5

 

 

 

17

23

84

73

6352

 

Source:

 

18

5

7802

7

62

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

19

6562

0

200

4