|
RHOXF1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RHOXF1 |
1 |
3252 |
1502 |
6767 |
1051 |
|
TF group |
homeodomain |
2 |
954 |
775 |
6767 |
813 |
|
Polypeptide used |
DBD |
3 |
5227 |
1540 |
137 |
379 |
|
Ligand sequence |
TGGATG30NTAT |
4 |
128 |
43 |
61 |
6767 |
|
Batch of SELEX experiment |
AI |
5 |
2742 |
1021 |
1323 |
1681 |
|
Seed sequence |
GGMTNAKCC |
6 |
6767 |
0 |
11 |
68 |
|
Hamming distance of sequences to seed |
1 |
7 |
482 |
97 |
2281 |
4486 |
|
SELEX cycle |
4 |
8 |
893 |
6767 |
446 |
285 |
|
Number of repeats |
dimeric |
9 |
978 |
6767 |
1238 |
1730 |
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
RHOXF1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RHOXF1 |
1 |
3224 |
2644 |
1855 |
3193 |
|
TF group |
homeodomain |
2 |
2837 |
0 |
478 |
10916 |
|
Polypeptide used |
DBD |
3 |
5543 |
0 |
5373 |
1367 |
|
Ligand sequence |
TGGATG30NTAT |
4 |
10916 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AI |
5 |
0 |
0 |
3540 |
7376 |
|
Seed sequence |
NTRAKCCN |
6 |
0 |
10916 |
0 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
10916 |
0 |
2275 |
|
SELEX cycle |
3 |
8 |
3223 |
3453 |
2117 |
2123 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
RHOXF1_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RHOXF1 |
1 |
558 |
553 |
1651 |
198 |
|
TF group |
homeodomain |
2 |
73 |
193 |
1651 |
239 |
|
Polypeptide used |
full |
3 |
1060 |
591 |
11 |
110 |
|
Ligand sequence |
TTAGAA20NTA |
4 |
26 |
58 |
43 |
1651 |
|
Batch of SELEX experiment |
AE |
5 |
695 |
248 |
203 |
504 |
|
Seed sequence |
GGMTNAKCC |
6 |
1651 |
4 |
0 |
85 |
|
Hamming distance of sequences to seed |
1 |
7 |
119 |
0 |
408 |
1243 |
|
SELEX cycle |
4 |
8 |
0 |
1651 |
68 |
72 |
|
Number of repeats |
dimeric |
9 |
65 |
1651 |
82 |
173 |
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
RHOXF1_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RHOXF1 |
1 |
1463 |
1699 |
856 |
2362 |
|
TF group |
homeodomain |
2 |
1705 |
252 |
300 |
6380 |
|
Polypeptide used |
full |
3 |
3332 |
0 |
3048 |
806 |
|
Ligand sequence |
TTAGAA20NTA |
4 |
6380 |
0 |
0 |
60 |
|
Batch of SELEX experiment |
AE |
5 |
0 |
0 |
1813 |
4567 |
|
Seed sequence |
NTRAKCCN |
6 |
155 |
6380 |
0 |
76 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
6380 |
44 |
970 |
|
SELEX cycle |
4 |
8 |
1643 |
3128 |
784 |
825 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |