|
RFX5_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RFX5 |
1 |
277 |
1075 |
790 |
490 |
|
TF group |
RFX |
2 |
90 |
0 |
2819 |
9 |
|
Polypeptide used |
DBD |
3 |
4 |
33 |
15 |
2902 |
|
Ligand sequence |
TGGAGC30NGAT |
4 |
47 |
98 |
10 |
2842 |
|
Batch of SELEX experiment |
AI |
5 |
821 |
81 |
1675 |
142 |
|
Seed sequence |
NGTTRCCATGGYAACN |
6 |
3 |
2378 |
38 |
69 |
|
Hamming distance of sequences to seed |
2 |
7 |
1 |
2118 |
7 |
725 |
|
SELEX cycle |
2 |
8 |
2146 |
42 |
47 |
188 |
|
Number of repeats |
dimeric |
9 |
144 |
56 |
22 |
2872 |
|
Comment |
|
10 |
760 |
11 |
2266 |
8 |
|
Representative matrix |
no |
11 |
143 |
48 |
2664 |
0 |
|
|
|
12 |
139 |
1613 |
61 |
882 |
|
|
|
13 |
2166 |
10 |
99 |
46 |
|
|
|
14 |
2206 |
21 |
16 |
9 |
|
Source: |
|
15 |
26 |
2379 |
12 |
67 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
462 |
890 |
905 |
286 |
|
|
|
|
|
|
|
|
|
|
|
|
RFX5_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RFX5 |
1 |
273 |
1034 |
814 |
471 |
|
TF group |
RFX |
2 |
83 |
2 |
2193 |
21 |
|
Polypeptide used |
DBD |
3 |
19 |
23 |
22 |
2199 |
|
Ligand sequence |
TGGAGC30NGAT |
4 |
67 |
88 |
17 |
2142 |
|
Batch of SELEX experiment |
AI |
5 |
1022 |
81 |
1018 |
119 |
|
Seed sequence |
SGTTRCCATRGCAACS |
6 |
7 |
2022 |
40 |
65 |
|
Hamming distance of sequences to seed |
2 |
7 |
2 |
1987 |
11 |
220 |
|
SELEX cycle |
2 |
8 |
1901 |
33 |
54 |
109 |
|
Number of repeats |
dimeric |
9 |
89 |
36 |
18 |
2167 |
|
Comment |
|
10 |
876 |
3 |
1246 |
0 |
|
Representative
matrix |
no |
11 |
121 |
40 |
2095 |
0 |
|
|
|
12 |
117 |
1880 |
57 |
353 |
|
|
|
13 |
1947 |
2 |
62 |
20 |
|
|
|
14 |
1964 |
24 |
10 |
4 |
|
Source: |
|
15 |
15 |
2049 |
9 |
38 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
454 |
861 |
913 |
279 |
|
|
|