|
RFX4_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RFX4 |
1 |
2196 |
4157 |
2887 |
2408 |
|
TF group |
RFX |
2 |
2259 |
17 |
15889 |
246 |
|
Polypeptide used |
DBD |
3 |
417 |
380 |
203 |
13637 |
|
Ligand sequence |
TGACAG20NGA |
4 |
6538 |
2705 |
121 |
10463 |
|
Batch of SELEX experiment |
O |
5 |
4222 |
464 |
6675 |
2315 |
|
Seed sequence |
NGTTNCCATGGNAACN |
6 |
3 |
9323 |
18 |
1626 |
|
Hamming distance of sequences to seed |
2 |
7 |
1 |
8836 |
45 |
3472 |
|
SELEX cycle |
3 |
8 |
10325 |
856 |
936 |
967 |
|
Number of repeats |
dimeric |
9 |
965 |
664 |
523 |
15458 |
|
Comment |
|
10 |
2944 |
68 |
14990 |
1 |
|
Representative matrix |
no |
11 |
4464 |
559 |
13778 |
107 |
|
|
|
12 |
1340 |
5757 |
98 |
3910 |
|
|
|
13 |
8911 |
127 |
1785 |
4986 |
|
|
|
14 |
9968 |
145 |
189 |
25 |
|
Source: |
|
15 |
33 |
8784 |
11 |
304 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
2000 |
3460 |
5109 |
1853 |
|
|
|
|
|
|
|
|
|
|
|
|
RFX4_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RFX4 |
1 |
811 |
2231 |
1303 |
779 |
|
TF group |
RFX |
2 |
61 |
0 |
5474 |
89 |
|
Polypeptide used |
DBD |
3 |
2 |
35 |
4 |
4893 |
|
Ligand sequence |
TGACAG20NGA |
4 |
168 |
344 |
9 |
4804 |
|
Batch of SELEX experiment |
O |
5 |
294 |
67 |
5375 |
77 |
|
Seed sequence |
SGTTGCYARGCAACS |
6 |
1 |
4324 |
0 |
3 |
|
Hamming distance of sequences to seed |
2 |
7 |
7 |
1339 |
22 |
3205 |
|
SELEX cycle |
3 |
8 |
3499 |
724 |
1212 |
0 |
|
Number of repeats |
dimeric |
9 |
1601 |
111 |
3171 |
55 |
|
Comment |
|
10 |
4 |
3 |
5409 |
2 |
|
Representative
matrix |
no |
11 |
831 |
3978 |
6 |
594 |
|
|
|
12 |
4172 |
7 |
176 |
1167 |
|
|
|
13 |
4295 |
19 |
24 |
2 |
|
Source: |
|
14 |
10 |
4263 |
0 |
8 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
741 |
1332 |
2711 |
181 |
|
|
|