|
RFX3_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RFX3 |
1 |
2881 |
7618 |
6511 |
4635 |
|
TF group |
RFX |
2 |
3237 |
47 |
33147 |
184 |
|
Polypeptide used |
DBD |
3 |
368 |
699 |
338 |
25178 |
|
Ligand sequence |
TGGCTT20NGA |
4 |
5844 |
3781 |
129 |
21627 |
|
Batch of SELEX experiment |
AC |
5 |
7660 |
1093 |
13832 |
3320 |
|
Seed sequence |
NGTTNCCATGGNAACN |
6 |
46 |
15003 |
484 |
1462 |
|
Hamming distance of sequences to seed |
2 |
7 |
1 |
14712 |
47 |
4144 |
|
SELEX cycle |
3 |
8 |
18969 |
393 |
569 |
1490 |
|
Number of repeats |
dimeric |
9 |
1771 |
376 |
326 |
24231 |
|
Comment |
|
10 |
8516 |
81 |
27877 |
2 |
|
Representative
matrix |
no |
11 |
6275 |
766 |
29307 |
34 |
|
|
|
12 |
2934 |
9365 |
969 |
5558 |
|
|
|
13 |
17869 |
110 |
3429 |
3611 |
|
|
|
14 |
19507 |
171 |
522 |
98 |
|
Source: |
|
15 |
95 |
15778 |
26 |
842 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
4359 |
7051 |
9040 |
1611 |
|
|
|
|
|
|
|
|
|
|
|
|
RFX3_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RFX3 |
1 |
129 |
1245 |
510 |
443 |
|
TF group |
RFX |
2 |
7 |
0 |
2230 |
94 |
|
Polypeptide used |
DBD |
3 |
2 |
6 |
3 |
2102 |
|
Ligand sequence |
TGGCTT20NGA |
4 |
35 |
81 |
5 |
2051 |
|
Batch of SELEX experiment |
AC |
5 |
137 |
66 |
2113 |
20 |
|
Seed sequence |
SGTTGCYARGCAACS |
6 |
1 |
2463 |
4 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
1 |
164 |
1 |
1943 |
|
SELEX cycle |
3 |
8 |
2143 |
5 |
8 |
0 |
|
Number of repeats |
dimeric |
9 |
832 |
90 |
1107 |
92 |
|
Comment |
|
10 |
0 |
0 |
2201 |
1 |
|
Representative matrix |
no |
11 |
99 |
2205 |
126 |
261 |
|
|
|
12 |
2124 |
12 |
104 |
106 |
|
|
|
13 |
2169 |
6 |
23 |
2 |
|
Source: |
|
14 |
85 |
2475 |
0 |
39 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
236 |
844 |
824 |
201 |
|
|
|
|
|
|
|
|
|
|
|
|
Rfx3_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Rfx3 |
1 |
121 |
526 |
558 |
146 |
|
TF group |
RFX |
2 |
4 |
3 |
2106 |
0 |
|
Polypeptide used |
DBD |
3 |
1 |
3 |
2 |
1682 |
|
Ligand sequence |
TGGGTA20NCG |
4 |
149 |
33 |
2 |
1483 |
|
Batch of SELEX experiment |
P |
5 |
460 |
11 |
1122 |
80 |
|
Seed sequence |
NGTTNCCATGGNAACN |
6 |
0 |
917 |
5 |
113 |
|
Hamming distance of sequences to seed |
2 |
7 |
1 |
892 |
0 |
162 |
|
SELEX cycle |
3 |
8 |
1111 |
0 |
7 |
13 |
|
Number of repeats |
dimeric |
9 |
10 |
5 |
3 |
1725 |
|
Comment |
|
10 |
300 |
0 |
1680 |
0 |
|
Representative
matrix |
no |
11 |
173 |
0 |
1854 |
2 |
|
|
|
12 |
54 |
692 |
12 |
392 |
|
|
|
13 |
1116 |
1 |
54 |
44 |
|
|
|
14 |
1135 |
1 |
0 |
3 |
|
Source: |
|
15 |
0 |
988 |
2 |
20 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
201 |
350 |
912 |
94 |
|
|
|