RARG_1

 

 

 

 

A

C

G

T

 

Name

RARG

1

1188

1759

4748

156

 

TF group

nuclearreceptor

2

3654

394

2344

12

 

Polypeptide used

DBD

3

3

1

5096

7

 

Ligand sequence

TGTTAT20NGA

4

0

0

4813

481

 

Batch of SELEX experiment

Y

5

4

22

88

5660

 

Seed sequence

GRGGTCAAAAGGTCANA

6

2

7680

109

76

 

Hamming distance of sequences to seed

2

7

6439

0

38

1

 

SELEX cycle

3

8

6311

78

55

265

 

Number of repeats

dimeric

9

6298

19

409

665

 

Comment

 

10

6302

19

315

1

 

Representative matrix

no

11

5

0

5139

1

 

 

 

12

0

0

5009

1370

 

 

 

13

24

20

40

5635

 

 

 

14

2

7766

76

81

 

 

 

15

6935

1

26

5

 

Source:

 

16

1902

3299

1220

468

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

5029

948

1603

1574

 

 

 

 

 

 

 

 

 

 

 

 

RARG_2

 

 

 

 

A

C

G

T

 

Name

RARG

1

1713

183

1110

184

 

TF group

nuclearreceptor

2

2426

79

537

3

 

Polypeptide used

DBD

3

2

0

2594

4

 

Ligand sequence

TGTTAT20NGA

4

1

0

2550

134

 

Batch of SELEX experiment

Y

5

4

11

31

2865

 

Seed sequence

RRGGTCANNNARAGGTCA

6

2

3933

16

12

 

Hamming distance of sequences to seed

2

7

3292

5

19

1

 

SELEX cycle

3

8

1077

855

226

799

 

Number of repeats

dimeric

9

642

1375

693

289

 

Comment

 

10

591

1031

250

1168

 

Representative matrix

no

11

2603

378

290

898

 

 

 

12

1699

449

1241

119

 

 

 

13

2919

111

624

3

 

 

 

14

1

0

2587

3

 

 

 

15

1

0

2461

273

 

 

 

16

12

12

17

2774

 

Source:

 

17

3

3928

15

20

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

3411

2

20

0

 

 

 

 

 

 

 

 

 

 

 

 

RARG_3

 

 

 

 

A

C

G

T

 

Name

RARG

1

3505

464

2914

589

 

TF group

nuclearreceptor

2

5660

86

1988

3

 

Polypeptide used

DBD

3

4

4

6254

4

 

Ligand sequence

TGTTAT20NGA

4

0

5

6039

353

 

Batch of SELEX experiment

Y

5

32

51

34

7345

 

Seed sequence

RRGGTCANNNRRGGTCA

6

33

10998

10

27

 

Hamming distance of sequences to seed

2

7

8789

12

75

3

 

SELEX cycle

3

8

2523

3276

918

1698

 

Number of repeats

dimeric

9

1532

2980

1793

1646

 

Comment

 

10

3959

1380

1287

1405

 

Representative matrix

no

11

3041

374

3504

237

 

 

 

12

6064

126

1779

6

 

 

 

13

5

1

6251

10

 

 

 

14

0

4

5445

984

 

 

 

15

35

42

67

7167

 

Source:

 

16

49

10855

71

136

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

9348

98

98

14

 

 

 

 

 

 

 

 

 

 

 

 

RARG_4

 

 

 

 

A

C

G

T

 

Name

RARG

1

208

97

2334

81

 

TF group

nuclearreceptor

2

2904

1

391

3

 

Polypeptide used

full

3

0

0

2287

2

 

Ligand sequence

TCGGGG20NGA

4

0

13

2272

3

 

Batch of SELEX experiment

AE

5

13

3

32

2677

 

Seed sequence

GRGGTCAAAAGKTCAC

6

2

4625

37

79

 

Hamming distance of sequences to seed

2

7

3556

0

7

0

 

SELEX cycle

3

8

3566

0

72

185

 

Number of repeats

dimeric

9

3600

13

4

3

 

Comment

 

10

3491

4

137

0

 

Representative matrix

no

11

1

5

2188

2

 

 

 

12

0

0

1883

374

 

 

 

13

0

57

7

2634

 

 

 

14

0

4570

4

94

 

Source:

 

15

3578

30

48

8

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

140

2792

514

851

 

 

 

 

 

 

 

 

 

 

 

 

RARG_5

 

 

 

 

A

C

G

T

 

Name

RARG

1

117

4

100

6

 

TF group

nuclearreceptor

2

245

4

16

2

 

Polypeptide used

full

3

0

0

185

4

 

Ligand sequence

TCGGGG20NGA

4

0

1

182

7

 

Batch of SELEX experiment

AE

5

1

0

1

205

 

Seed sequence

RRGGTCANNNARAGGTCA

6

1

348

0

0

 

Hamming distance of sequences to seed

2

7

265

0

6

1

 

SELEX cycle

3

8

193

7

38

8

 

Number of repeats

dimeric

9

9

58

106

39

 

Comment

 

10

6

108

34

101

 

Representative matrix

no

11

229

20

18

54

 

 

 

12

134

6

87

4

 

 

 

13

203

9

66

1

 

 

 

14

1

2

172

1

 

 

 

15

0

2

138

49

 

 

 

16

1

5

3

204

 

Source:

 

17

6

369

2

19

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

273

1

8

5

 

 

 

 

 

 

 

 

 

 

 

 

RARG_6

 

 

 

 

A

C

G

T

 

Name

RARG

1

251

60

176

19

 

TF group

nuclearreceptor

2

345

15

88

0

 

Polypeptide used

full

3

10

9

371

4

 

Ligand sequence

TCGGGG20NGA

4

3

3

342

52

 

Batch of SELEX experiment

AE

5

19

12

34

392

 

Seed sequence

RRGGTCANNNRRGGTCA

6

25

580

18

26

 

Hamming distance of sequences to seed

2

7

472

3

34

3

 

SELEX cycle

3

8

210

112

25

108

 

Number of repeats

dimeric

9

29

165

137

110

 

Comment

 

10

187

55

68

120

 

Representative matrix

no

11

162

74

178

18

 

 

 

12

304

29

109

6

 

 

 

13

11

65

343

11

 

 

 

14

6

6

321

72

 

 

 

15

16

22

24

371

 

Source:

 

16

39

616

67

31

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

488

20

28

6

 

 

 

 

 

 

 

 

 

 

 

 

Rarg_7

 

 

 

 

A

C

G

T

 

Name

Rarg

1

12548

1655

11289

1309

 

TF group

nuclearreceptor

2

7220

147

3074

5

 

Polypeptide used

DBD

3

3

0

12765

0

 

Ligand sequence

TATCTG20NTCG

4

0

3

11969

1826

 

Batch of SELEX experiment

Z

5

20

35

64

10030

 

Seed sequence

GRGGTCAAAAGKTCAC

6

3

12653

38

79

 

Hamming distance of sequences to seed

2

7

8844

2

15

0

 

SELEX cycle

4

8

9169

49

114

257

 

Number of repeats

dimeric

9

8864

13

618

353

 

Comment

 

10

9211

4

394

0

 

Representative matrix

no

11

1

1

13267

3

 

 

 

12

0

2

9298

2628

 

 

 

13

6

40

51

9774

 

 

 

14

0

11730

67

105

 

Source:

 

15

9147

4

82

1

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

11044

4836

2470

5566

 

 

 

 

 

 

 

 

 

 

 

 

Rarg_8

 

 

 

 

A

C

G

T

 

Name

Rarg

1

2008

23

1088

99

 

TF group

nuclearreceptor

2

2923

6

82

0

 

Polypeptide used

DBD

3

0

0

3818

0

 

Ligand sequence

TATCTG20NTCG

4

1

0

3609

250

 

Batch of SELEX experiment

Z

5

3

3

2

2698

 

Seed sequence

RRGGTCANNNARAGGTCA

6

0

3911

4

0

 

Hamming distance of sequences to seed

2

7

2465

2

4

1

 

SELEX cycle

4

8

1052

334

172

1109

 

Number of repeats

dimeric

9

537

1606

1008

214

 

Comment

 

10

713

933

195

1118

 

Representative matrix

no

11

2479

129

140

221

 

 

 

12

2172

18

656

77

 

 

 

13

2500

14

320

0

 

 

 

14

0

0

3556

0

 

 

 

15

0

0

3329

226

 

 

 

16

2

0

0

3173

 

Source:

 

17

0

3286

1

13

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

3197

0

0

1

 

 

 

 

 

 

 

 

 

 

 

 

Rarg_9

 

 

 

 

A

C

G

T

 

Name

Rarg

1

4074

10

806

31

 

TF group

nuclearreceptor

2

4543

7

267

0

 

Polypeptide used

DBD

3

0

4

5888

2

 

Ligand sequence

TATCTG20NTCG

4

0

0

5573

200

 

Batch of SELEX experiment

Z

5

0

11

12

4309

 

Seed sequence

RRGGTCANNNRRGGTCA

6

2

6256

0

0

 

Hamming distance of sequences to seed

2

7

4044

3

12

0

 

SELEX cycle

4

8

1394

2677

386

780

 

Number of repeats

dimeric

9

314

1778

2442

595

 

Comment

 

10

3248

482

558

479

 

Representative matrix

no

11

2745

58

2133

57

 

 

 

12

3603

32

838

2

 

 

 

13

0

0

5891

1

 

 

 

14

0

8

5040

319

 

 

 

15

14

2

0

4540

 

Source:

 

16

7

5340

2

22

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

4764

5

6

0