|
PRRX1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
PRRX1 |
1 |
4132 |
9063 |
4339 |
6364 |
|
TF group |
homeodomain |
2 |
2373 |
11122 |
1121 |
12775 |
|
Polypeptide used |
DBD |
3 |
23897 |
1088 |
1776 |
810 |
|
Ligand sequence |
TAACGG20NGCA |
4 |
23897 |
503 |
202 |
209 |
|
Batch of SELEX experiment |
AC |
5 |
0 |
3 |
0 |
23897 |
|
Seed sequence |
NYAATTAN |
6 |
1264 |
2302 |
1004 |
23897 |
|
Hamming distance of sequences to seed |
1 |
7 |
23897 |
644 |
136 |
1229 |
|
SELEX cycle |
2 |
8 |
9498 |
4269 |
6366 |
3765 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
PRRX1_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
PRRX1 |
1 |
1414 |
4493 |
1746 |
2523 |
|
TF group |
homeodomain |
2 |
684 |
5111 |
326 |
5066 |
|
Polypeptide used |
full |
3 |
10177 |
764 |
640 |
532 |
|
Ligand sequence |
TTCCCC20NTA |
4 |
10177 |
358 |
117 |
307 |
|
Batch of SELEX experiment |
AD |
5 |
57 |
28 |
0 |
10177 |
|
Seed sequence |
NYAATTAN |
6 |
547 |
1210 |
438 |
10177 |
|
Hamming distance of sequences to seed |
1 |
7 |
10177 |
709 |
57 |
979 |
|
SELEX cycle |
2 |
8 |
3287 |
2230 |
2968 |
1693 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
PRRX1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
PRRX1 |
1 |
90 |
53 |
22 |
617 |
|
TF group |
homeodomain |
2 |
617 |
29 |
100 |
77 |
|
Polypeptide used |
full |
3 |
617 |
21 |
27 |
17 |
|
Ligand sequence |
TTCCCC20NTA |
4 |
50 |
211 |
78 |
617 |
|
Batch of SELEX experiment |
AD |
5 |
36 |
354 |
85 |
263 |
|
Seed sequence |
TAATYTAATTA |
6 |
60 |
285 |
219 |
617 |
|
Hamming distance of sequences to seed |
1 |
7 |
617 |
31 |
83 |
16 |
|
SELEX cycle |
2 |
8 |
617 |
9 |
19 |
8 |
|
Number of repeats |
dimeric |
9 |
0 |
2 |
4 |
617 |
|
Comment |
|
10 |
75 |
63 |
6 |
617 |
|
Representative
matrix |
no |
11 |
617 |
13 |
70 |
84 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |