|
PROP1_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
PROP1 |
1 |
63 |
12 |
10 |
575 |
|
TF group |
homeodomain |
2 |
575 |
0 |
0 |
11 |
|
Polypeptide used |
DBD |
3 |
575 |
0 |
2 |
0 |
|
Ligand sequence |
TCCCGA30NGCC |
4 |
41 |
39 |
18 |
575 |
|
Batch of SELEX experiment |
AI |
5 |
28 |
209 |
20 |
367 |
|
Seed sequence |
TAATYNAATTA |
6 |
183 |
57 |
78 |
258 |
|
Hamming distance of sequences to seed |
1 |
7 |
575 |
38 |
0 |
33 |
|
SELEX cycle |
4 |
8 |
575 |
3 |
46 |
6 |
|
Number of repeats |
dimeric |
9 |
2 |
0 |
0 |
575 |
|
Comment |
|
10 |
13 |
18 |
6 |
575 |
|
Representative matrix |
no |
11 |
575 |
0 |
15 |
47 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
PROP1_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
PROP1 |
1 |
1239 |
785 |
264 |
4996 |
|
TF group |
homeodomain |
2 |
4996 |
77 |
310 |
411 |
|
Polypeptide used |
full |
3 |
4996 |
73 |
32 |
15 |
|
Ligand sequence |
TGTATT20NGA |
4 |
659 |
1426 |
202 |
3570 |
|
Batch of SELEX experiment |
AE |
5 |
572 |
2901 |
839 |
2095 |
|
Seed sequence |
TAAYYNAATTA |
6 |
982 |
1354 |
855 |
1804 |
|
Hamming distance of sequences to seed |
1 |
7 |
4996 |
1491 |
531 |
661 |
|
SELEX cycle |
3 |
8 |
4996 |
359 |
141 |
279 |
|
Number of repeats |
dimeric |
9 |
11 |
47 |
18 |
4996 |
|
Comment |
|
10 |
555 |
420 |
81 |
4996 |
|
Representative
matrix |
no |
11 |
4996 |
199 |
410 |
594 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |