|
POU3F3_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
POU3F3 |
1 |
576 |
75 |
137 |
290 |
|
TF group |
POU |
2 |
440 |
41 |
131 |
637 |
|
Polypeptide used |
DBD |
3 |
129 |
57 |
64 |
1078 |
|
Ligand sequence |
TCGCAT20NACT |
4 |
1078 |
11 |
12 |
30 |
|
Batch of SELEX experiment |
Y |
5 |
25 |
33 |
49 |
1078 |
|
Seed sequence |
NWTATGCWAATTW |
6 |
22 |
10 |
1078 |
86 |
|
Hamming distance of sequences to seed |
1 |
7 |
28 |
1078 |
118 |
343 |
|
SELEX cycle |
4 |
8 |
506 |
4 |
1 |
572 |
|
Number of repeats |
monomeric |
9 |
1078 |
11 |
77 |
79 |
|
Comment |
|
10 |
1078 |
6 |
15 |
14 |
|
Representative
matrix |
no |
11 |
53 |
20 |
12 |
1078 |
|
|
|
12 |
240 |
141 |
237 |
1078 |
|
Source: |
|
13 |
536 |
85 |
115 |
542 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
POU3F3_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
POU3F3 |
1 |
680 |
123 |
70 |
446 |
|
TF group |
POU |
2 |
276 |
128 |
47 |
1126 |
|
Polypeptide used |
DBD |
3 |
184 |
49 |
1126 |
106 |
|
Ligand sequence |
TCGCAT20NACT |
4 |
438 |
688 |
4 |
31 |
|
Batch of SELEX experiment |
Y |
5 |
1126 |
66 |
28 |
31 |
|
Seed sequence |
WTGMATAAWTNA |
6 |
19 |
5 |
5 |
1126 |
|
Hamming distance of sequences to seed |
1 |
7 |
1126 |
27 |
59 |
216 |
|
SELEX cycle |
4 |
8 |
1126 |
95 |
39 |
320 |
|
Number of repeats |
monomeric |
9 |
578 |
84 |
43 |
548 |
|
Comment |
|
10 |
135 |
61 |
156 |
1126 |
|
Representative matrix |
no |
11 |
313 |
151 |
53 |
608 |
|
Source: |
|
12 |
1126 |
143 |
182 |
268 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
POU3F3_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
POU3F3 |
1 |
274 |
28 |
29 |
170 |
|
TF group |
POU |
2 |
140 |
18 |
22 |
445 |
|
Polypeptide used |
DBD |
3 |
181 |
29 |
263 |
129 |
|
Ligand sequence |
TCGCAT20NACT |
4 |
297 |
147 |
9 |
30 |
|
Batch of SELEX experiment |
Y |
5 |
445 |
13 |
23 |
220 |
|
Seed sequence |
WTRMATATKYAW |
6 |
64 |
30 |
7 |
445 |
|
Hamming distance of sequences to seed |
1 |
7 |
445 |
20 |
12 |
49 |
|
SELEX cycle |
4 |
8 |
441 |
44 |
27 |
445 |
|
Number of repeats |
dimeric |
9 |
68 |
31 |
206 |
239 |
|
Comment |
|
10 |
182 |
286 |
62 |
159 |
|
Representative
matrix |
no |
11 |
445 |
17 |
40 |
83 |
|
Source: |
|
12 |
222 |
27 |
52 |
222 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |