|
PITX1_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
PITX1 |
1 |
801 |
900 |
727 |
561 |
|
TF group |
homeodomain |
2 |
727 |
1455 |
337 |
1533 |
|
Polypeptide used |
DBD |
3 |
220 |
0 |
6 |
2989 |
|
Ligand sequence |
TCATGC20NCG |
4 |
2989 |
16 |
82 |
82 |
|
Batch of SELEX experiment |
Y |
5 |
2989 |
0 |
2 |
0 |
|
Seed sequence |
NYTAATCCN |
6 |
131 |
56 |
445 |
2989 |
|
Hamming distance of sequences to seed |
1 |
7 |
130 |
2989 |
89 |
116 |
|
SELEX cycle |
3 |
8 |
100 |
2989 |
71 |
457 |
|
Number of repeats |
monomeric |
9 |
536 |
1510 |
380 |
562 |
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
PITX1_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
PITX1 |
1 |
1356 |
2315 |
2275 |
2155 |
|
TF group |
homeodomain |
2 |
2863 |
3459 |
1373 |
8101 |
|
Polypeptide used |
full |
3 |
465 |
3 |
3 |
8101 |
|
Ligand sequence |
TGAGCA20NCGA |
4 |
8101 |
12 |
289 |
64 |
|
Batch of SELEX experiment |
AF |
5 |
8101 |
0 |
22 |
0 |
|
Seed sequence |
NTTAATCCN |
6 |
143 |
37 |
903 |
8101 |
|
Hamming distance of sequences to seed |
1 |
7 |
408 |
8101 |
284 |
553 |
|
SELEX cycle |
3 |
8 |
291 |
8101 |
263 |
1967 |
|
Number of repeats |
monomeric |
9 |
1869 |
2782 |
1161 |
2289 |
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
PITX1_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
PITX1 |
1 |
600 |
842 |
338 |
1335 |
|
TF group |
homeodomain |
2 |
162 |
23 |
0 |
3116 |
|
Polypeptide used |
full |
3 |
3116 |
155 |
210 |
49 |
|
Ligand sequence |
TCTCTT20NTCG |
4 |
3116 |
0 |
0 |
17 |
|
Batch of SELEX experiment |
W |
5 |
70 |
59 |
467 |
3116 |
|
Seed sequence |
NTAATCCN |
6 |
222 |
3116 |
42 |
235 |
|
Hamming distance of sequences to seed |
1 |
7 |
164 |
3116 |
138 |
612 |
|
SELEX cycle |
2 |
8 |
711 |
1275 |
430 |
700 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
replicate experiment |
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |