|
PDX1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
PDX1 |
1 |
279 |
447 |
581 |
285 |
|
TF group |
homeodomain |
2 |
80 |
578 |
25 |
1015 |
|
Polypeptide used |
DBD |
3 |
1592 |
412 |
174 |
103 |
|
Ligand sequence |
TGGAAT30NAAT |
4 |
1592 |
50 |
24 |
42 |
|
Batch of SELEX experiment |
AI |
5 |
17 |
25 |
16 |
1592 |
|
Seed sequence |
NYAATTARNNNYAATTAN |
6 |
45 |
55 |
160 |
1592 |
|
Hamming distance of sequences to seed |
1 |
7 |
1592 |
23 |
138 |
141 |
|
SELEX cycle |
3 |
8 |
887 |
218 |
706 |
154 |
|
Number of repeats |
dimeric |
9 |
248 |
524 |
458 |
363 |
|
Comment |
|
10 |
491 |
260 |
583 |
258 |
|
Representative matrix |
no |
11 |
287 |
420 |
567 |
318 |
|
|
|
12 |
71 |
511 |
35 |
1081 |
|
|
|
13 |
1592 |
427 |
134 |
102 |
|
|
|
14 |
1592 |
49 |
37 |
42 |
|
|
|
15 |
30 |
23 |
20 |
1592 |
|
|
|
16 |
89 |
100 |
176 |
1592 |
|
Source: |
|
17 |
1592 |
25 |
135 |
89 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
571 |
302 |
493 |
227 |
|
|
|
|
|
|
|
|
|
|
|
|
PDX1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
PDX1 |
1 |
1483 |
2206 |
2441 |
999 |
|
TF group |
homeodomain |
2 |
292 |
2469 |
0 |
4661 |
|
Polypeptide used |
DBD |
3 |
4839 |
2291 |
185 |
78 |
|
Ligand sequence |
TGGAAT30NAAT |
4 |
7130 |
45 |
0 |
0 |
|
Batch of SELEX experiment |
AI |
5 |
0 |
0 |
0 |
7130 |
|
Seed sequence |
NYMATTAN |
6 |
0 |
0 |
0 |
7130 |
|
Hamming distance of sequences to seed |
1 |
7 |
7130 |
0 |
0 |
0 |
|
SELEX cycle |
3 |
8 |
2181 |
1216 |
2881 |
852 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |