|
OTX2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
OTX2 |
1 |
779 |
624 |
1325 |
1229 |
|
TF group |
homeodomain |
2 |
1059 |
866 |
540 |
1493 |
|
Polypeptide used |
DBD |
3 |
111 |
26 |
19 |
3957 |
|
Ligand sequence |
TATGGG20NGGG |
4 |
3957 |
13 |
67 |
70 |
|
Batch of SELEX experiment |
AC |
5 |
3957 |
0 |
10 |
0 |
|
Seed sequence |
NNTAATCCGMTTANN |
6 |
70 |
21 |
374 |
3957 |
|
Hamming distance of sequences to seed |
1 |
7 |
36 |
3957 |
223 |
22 |
|
SELEX cycle |
4 |
8 |
118 |
3957 |
84 |
114 |
|
Number of repeats |
dimeric |
9 |
80 |
182 |
3957 |
1060 |
|
Comment |
|
10 |
2856 |
1101 |
123 |
148 |
|
Representative matrix |
no |
11 |
38 |
67 |
34 |
3957 |
|
|
|
12 |
185 |
58 |
38 |
3957 |
|
|
|
13 |
3957 |
62 |
124 |
432 |
|
Source: |
|
14 |
1362 |
440 |
809 |
1347 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
995 |
1013 |
974 |
975 |
|
|
|
|
|
|
|
|
|
|
|
|
OTX2_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
OTX2 |
1 |
6051 |
6846 |
2453 |
12678 |
|
TF group |
homeodomain |
2 |
971 |
136 |
0 |
28028 |
|
Polypeptide used |
DBD |
3 |
28028 |
43 |
360 |
1328 |
|
Ligand sequence |
TATGGG20NGGG |
4 |
28028 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AC |
5 |
370 |
62 |
2361 |
28028 |
|
Seed sequence |
NTAATCCN |
6 |
1062 |
28028 |
699 |
1228 |
|
Hamming distance of sequences to seed |
1 |
7 |
1094 |
28028 |
1630 |
8343 |
|
SELEX cycle |
4 |
8 |
2573 |
7601 |
8260 |
9594 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |