|
NKX6-1_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NKX6-1 |
1 |
2713 |
3310 |
4488 |
2427 |
|
TF group |
homeodomain |
2 |
0 |
4163 |
0 |
8774 |
|
Polypeptide used |
DBD |
3 |
8543 |
4395 |
319 |
1205 |
|
Ligand sequence |
TGCGGG30NGGC |
4 |
12938 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AI |
5 |
0 |
0 |
0 |
12938 |
|
Seed sequence |
NYMATTAN |
6 |
461 |
0 |
0 |
12938 |
|
Hamming distance of sequences to seed |
1 |
7 |
12938 |
0 |
0 |
0 |
|
SELEX cycle |
3 |
8 |
7141 |
1566 |
1019 |
3212 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
NKX6-1_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NKX6-1 |
1 |
403 |
695 |
734 |
381 |
|
TF group |
homeodomain |
2 |
0 |
573 |
0 |
1640 |
|
Polypeptide used |
full |
3 |
1407 |
805 |
0 |
195 |
|
Ligand sequence |
TGAAAC20NAAA |
4 |
2212 |
200 |
12 |
40 |
|
Batch of SELEX experiment |
W |
5 |
0 |
0 |
0 |
2212 |
|
Seed sequence |
NYMATTAN |
6 |
58 |
45 |
0 |
2212 |
|
Hamming distance of sequences to seed |
1 |
7 |
2212 |
27 |
132 |
17 |
|
SELEX cycle |
4 |
8 |
1450 |
294 |
142 |
327 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Nkx6-1_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Nkx6-1 |
1 |
502 |
705 |
732 |
457 |
|
TF group |
homeodomain |
2 |
47 |
903 |
104 |
1492 |
|
Polypeptide used |
DBD |
3 |
1482 |
913 |
105 |
167 |
|
Ligand sequence |
TCGTGT20NGTT |
4 |
2395 |
237 |
0 |
0 |
|
Batch of SELEX experiment |
AC |
5 |
0 |
0 |
0 |
2395 |
|
Seed sequence |
NYMATTAN |
6 |
30 |
553 |
109 |
2395 |
|
Hamming distance of sequences to seed |
1 |
7 |
2395 |
213 |
209 |
0 |
|
SELEX cycle |
2 |
8 |
1206 |
432 |
217 |
540 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |