|
NKX3-1_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NKX3-1 |
1 |
1038 |
677 |
564 |
286 |
|
TF group |
homeodomain |
2 |
432 |
2565 |
589 |
150 |
|
Polypeptide used |
full |
3 |
0 |
2565 |
0 |
204 |
|
Ligand sequence |
TCCCTC20NCG |
4 |
2565 |
75 |
51 |
116 |
|
Batch of SELEX experiment |
AD |
5 |
82 |
2565 |
0 |
27 |
|
Seed sequence |
NCCACTTAA |
6 |
12 |
30 |
4 |
2565 |
|
Hamming distance of sequences to seed |
1 |
7 |
22 |
214 |
0 |
2565 |
|
SELEX cycle |
3 |
8 |
2565 |
235 |
116 |
260 |
|
Number of repeats |
monomeric |
9 |
2565 |
756 |
1067 |
741 |
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Nkx3-1_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Nkx3-1 |
1 |
2438 |
991 |
1361 |
544 |
|
TF group |
homeodomain |
2 |
981 |
5335 |
1776 |
275 |
|
Polypeptide used |
DBD |
3 |
0 |
5335 |
10 |
336 |
|
Ligand sequence |
TCTTAG20NATG |
4 |
5335 |
28 |
10 |
88 |
|
Batch of SELEX experiment |
AA |
5 |
59 |
5335 |
9 |
9 |
|
Seed sequence |
NCCACTTAA |
6 |
0 |
1 |
0 |
5335 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
254 |
0 |
5335 |
|
SELEX cycle |
4 |
8 |
5335 |
273 |
173 |
523 |
|
Number of repeats |
monomeric |
9 |
5335 |
1407 |
2132 |
1509 |
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |