|
NKX2-3_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NKX2-3 |
1 |
305 |
127 |
87 |
116 |
|
TF group |
homeodomain |
2 |
143 |
635 |
162 |
15 |
|
Polypeptide used |
DBD |
3 |
11 |
635 |
0 |
37 |
|
Ligand sequence |
TGCTAC20NGA |
4 |
635 |
7 |
0 |
38 |
|
Batch of SELEX experiment |
Y |
5 |
0 |
635 |
6 |
1 |
|
Seed sequence |
NCCACTTRAN |
6 |
0 |
0 |
21 |
635 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
40 |
17 |
635 |
|
SELEX cycle |
4 |
8 |
293 |
88 |
342 |
36 |
|
Number of repeats |
monomeric |
9 |
635 |
75 |
70 |
161 |
|
Comment |
|
10 |
287 |
174 |
137 |
37 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
NKX2-3_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NKX2-3 |
1 |
3572 |
2182 |
1989 |
1535 |
|
TF group |
homeodomain |
2 |
2025 |
9278 |
4499 |
140 |
|
Polypeptide used |
full |
3 |
38 |
9278 |
0 |
132 |
|
Ligand sequence |
TGGAAT20NGA |
4 |
9278 |
98 |
16 |
250 |
|
Batch of SELEX experiment |
AE |
5 |
8 |
9278 |
0 |
0 |
|
Seed sequence |
NCCACTTRAN |
6 |
0 |
0 |
18 |
9278 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
939 |
0 |
9278 |
|
SELEX cycle |
4 |
8 |
4241 |
1451 |
5037 |
343 |
|
Number of repeats |
monomeric |
9 |
9278 |
917 |
1831 |
2437 |
|
Comment |
|
10 |
3170 |
2754 |
2788 |
566 |
|
Representative
matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |