|
NHLH1_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NHLH1 |
1 |
30 |
189 |
14 |
11 |
|
TF group |
bHLH |
2 |
34 |
36 |
189 |
12 |
|
Polypeptide used |
DBD |
3 |
4 |
189 |
0 |
0 |
|
Ligand sequence |
TGGGCG20NGA |
4 |
189 |
1 |
3 |
0 |
|
Batch of SELEX experiment |
W |
5 |
0 |
38 |
189 |
19 |
|
Seed sequence |
CGCAGCTGCG |
6 |
5 |
189 |
1 |
1 |
|
Hamming distance of sequences to seed |
1 |
7 |
4 |
0 |
0 |
189 |
|
SELEX cycle |
4 |
8 |
2 |
0 |
189 |
0 |
|
Number of repeats |
dimeric |
9 |
0 |
189 |
0 |
0 |
|
Comment |
|
10 |
32 |
98 |
189 |
67 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
NHLH1_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NHLH1 |
1 |
788 |
2166 |
181 |
111 |
|
TF group |
bHLH |
2 |
461 |
179 |
2166 |
142 |
|
Polypeptide used |
full |
3 |
3 |
2166 |
0 |
0 |
|
Ligand sequence |
TGATGG20NGTA |
4 |
2166 |
3 |
1 |
0 |
|
Batch of SELEX experiment |
W |
5 |
0 |
301 |
2166 |
114 |
|
Seed sequence |
CGCAGCTGCG |
6 |
96 |
2166 |
124 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
4 |
4 |
2166 |
|
SELEX cycle |
4 |
8 |
2 |
4 |
2166 |
1 |
|
Number of repeats |
dimeric |
9 |
296 |
2166 |
102 |
350 |
|
Comment |
|
10 |
308 |
736 |
2166 |
1489 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |