|
NFIX_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NFIX |
1 |
4793 |
34395 |
2449 |
37897 |
|
TF group |
NFI |
2 |
862 |
786 |
5251 |
76662 |
|
Polypeptide used |
full |
3 |
11 |
11 |
79856 |
17 |
|
Ligand sequence |
TCAACC20NCG |
4 |
690 |
10 |
80487 |
362 |
|
Batch of SELEX experiment |
AC |
5 |
14569 |
63932 |
1225 |
1111 |
|
Seed sequence |
YTGGCNNNNTGCCAA |
6 |
26565 |
12418 |
16425 |
17674 |
|
Hamming distance of sequences to seed |
2 |
7 |
17051 |
23752 |
14384 |
18234 |
|
SELEX cycle |
3 |
8 |
18549 |
18296 |
19335 |
18266 |
|
Number of repeats |
dimeric |
9 |
18400 |
13358 |
25034 |
18651 |
|
Comment |
|
10 |
11044 |
7917 |
7372 |
66568 |
|
Representative
matrix |
no |
11 |
874 |
881 |
83093 |
11389 |
|
|
|
12 |
223 |
66771 |
31 |
391 |
|
|
|
13 |
6 |
66848 |
1 |
16 |
|
Source: |
|
14 |
67572 |
5319 |
980 |
734 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
58277 |
3734 |
13310 |
7772 |
|
|
|
|
|
|
|
|
|
|
|
|
NFIX_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NFIX |
1 |
7951 |
8810 |
8725 |
7378 |
|
TF group |
NFI |
2 |
7832 |
6134 |
10855 |
8043 |
|
Polypeptide used |
full |
3 |
11279 |
9695 |
5911 |
32864 |
|
Ligand sequence |
TCAACC20NCG |
4 |
132 |
186 |
32864 |
2539 |
|
Batch of SELEX experiment |
AC |
5 |
3 |
32864 |
3257 |
29 |
|
Seed sequence |
NNTGCCAAN |
6 |
0 |
32864 |
0 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
32864 |
2230 |
180 |
110 |
|
SELEX cycle |
3 |
8 |
32864 |
1356 |
12688 |
2399 |
|
Number of repeats |
monomeric |
9 |
8251 |
9039 |
9135 |
6439 |
|
Comment |
model generated using exact match to seed; dimeric
binding is favored heavily over this monomer; removed from network
representations |
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
NFIX_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NFIX |
1 |
6749 |
5095 |
5573 |
6719 |
|
TF group |
NFI |
2 |
6904 |
3320 |
7121 |
6792 |
|
Polypeptide used |
full |
3 |
6464 |
4674 |
3171 |
24137 |
|
Ligand sequence |
TGAGAT20NAGA |
4 |
13 |
29 |
24137 |
2293 |
|
Batch of SELEX experiment |
W |
5 |
0 |
24137 |
4728 |
0 |
|
Seed sequence |
NNTGCCAAN |
6 |
0 |
24137 |
0 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
24137 |
1533 |
106 |
295 |
|
SELEX cycle |
3 |
8 |
24137 |
1095 |
7380 |
3410 |
|
Number of repeats |
monomeric |
9 |
6007 |
5429 |
6068 |
6634 |
|
Comment |
dimeric binding is favored heavily over this
monomer; removed from network representations |
|
|
|
|
|
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |