|
|
Mafb_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Mafb |
|
1 |
1237 |
174 |
326 |
446 |
|
TF group |
bZIP |
|
2 |
1263 |
121 |
159 |
639 |
|
Polypeptide used |
DBD |
|
3 |
1080 |
216 |
182 |
704 |
|
Ligand sequence |
TCGTTA20NTTT |
|
4 |
744 |
398 |
429 |
611 |
|
Batch of SELEX experiment |
AA |
|
5 |
264 |
618 |
31 |
2182 |
|
Seed sequence |
NNNNTGCTGACN |
|
6 |
2 |
14 |
2182 |
5 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
295 |
2182 |
5 |
7 |
|
SELEX cycle |
3 |
|
8 |
31 |
36 |
2 |
2182 |
|
Number of repeats |
monomeric |
|
9 |
45 |
13 |
2182 |
170 |
|
Comment |
|
|
10 |
2182 |
13 |
17 |
13 |
|
Representative matrix |
yes |
|
11 |
182 |
2182 |
490 |
273 |
|
Source: |
|
|
12 |
582 |
138 |
646 |
816 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
Mafb_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Mafb |
|
1 |
2289 |
746 |
813 |
2375 |
|
TF group |
bZIP |
|
2 |
1827 |
1131 |
2081 |
1802 |
|
Polypeptide used |
DBD |
|
3 |
591 |
1724 |
171 |
6240 |
|
Ligand sequence |
TCGTTA20NTTT |
|
4 |
48 |
64 |
8546 |
4 |
|
Batch of SELEX experiment |
AA |
|
5 |
722 |
5046 |
22 |
148 |
|
Seed sequence |
NNTGCTGASTCAGCANN |
|
6 |
1012 |
480 |
292 |
7100 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
555 |
221 |
8073 |
1236 |
|
SELEX cycle |
4 |
|
8 |
5462 |
553 |
97 |
571 |
|
Number of repeats |
dimeric |
|
9 |
712 |
3026 |
3099 |
817 |
|
Comment |
|
|
10 |
973 |
99 |
1104 |
7111 |
|
Representative matrix |
yes |
|
11 |
1316 |
4680 |
289 |
424 |
|
|
|
|
12 |
5381 |
148 |
726 |
947 |
|
|
|
|
13 |
326 |
25 |
9071 |
1036 |
|
|
|
|
14 |
8 |
4797 |
88 |
76 |
|
|
|
|
15 |
4867 |
88 |
1706 |
607 |
|
Source: |
|
|
16 |
1533 |
1539 |
1384 |
2325 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
17 |
2056 |
631 |
1168 |
3128 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mafb_d2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Mafb |
|
1 |
849 |
215 |
206 |
686 |
|
TF group |
bZIP |
|
2 |
547 |
415 |
574 |
558 |
|
Polypeptide used |
DBD |
|
3 |
107 |
627 |
36 |
1414 |
|
Ligand sequence |
TCGTTA20NTTT |
|
4 |
31 |
31 |
2496 |
7 |
|
Batch of SELEX experiment |
AA |
|
5 |
288 |
1774 |
6 |
28 |
|
Seed sequence |
NNYGCTGACGTMAGCANN |
|
6 |
156 |
80 |
42 |
2157 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
192 |
70 |
2200 |
184 |
|
SELEX cycle |
4 |
|
8 |
1968 |
9 |
37 |
8 |
|
Number of repeats |
dimeric |
|
9 |
11 |
1710 |
114 |
298 |
|
Comment |
|
|
10 |
324 |
120 |
2206 |
25 |
|
Representative matrix |
yes |
|
11 |
58 |
169 |
28 |
2178 |
|
|
|
|
12 |
926 |
846 |
47 |
97 |
|
|
|
|
13 |
1622 |
62 |
272 |
296 |
|
|
|
|
14 |
131 |
17 |
2422 |
292 |
|
|
|
|
15 |
5 |
1741 |
35 |
31 |
|
|
|
|
16 |
1615 |
27 |
172 |
213 |
|
Source: |
|
|
17 |
476 |
557 |
491 |
599 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
18 |
651 |
200 |
347 |
879 |
|
|
|