|
MYBL2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MYBL2 |
1 |
481 |
9 |
72 |
8 |
|
TF group |
MYB |
2 |
481 |
14 |
40 |
62 |
|
Polypeptide used |
DBD |
3 |
15 |
481 |
3 |
1 |
|
Ligand sequence |
TGAGTG20NGA |
4 |
17 |
481 |
573 |
83 |
|
Batch of SELEX experiment |
AC |
5 |
4 |
1 |
481 |
3 |
|
Seed sequence |
AACCGTTAACGGNN |
6 |
68 |
47 |
11 |
481 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
13 |
0 |
481 |
|
SELEX cycle |
3 |
8 |
481 |
0 |
15 |
2 |
|
Number of repeats |
dimeric |
9 |
481 |
72 |
42 |
38 |
|
Comment |
|
10 |
0 |
481 |
3 |
15 |
|
Representative matrix |
no |
11 |
82 |
449 |
481 |
136 |
|
|
|
12 |
65 |
72 |
481 |
131 |
|
Source: |
|
13 |
116 |
126 |
16 |
223 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
43 |
164 |
8 |
266 |
|
|
|
|
|
|
|
|
|
|
|
|
MYBL2_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MYBL2 |
1 |
1746 |
64 |
907 |
291 |
|
TF group |
MYB |
2 |
135 |
1750 |
52 |
4 |
|
Polypeptide used |
DBD |
3 |
223 |
1713 |
354 |
26 |
|
Ligand sequence |
TGAGTG20NGA |
4 |
36 |
9 |
3302 |
3 |
|
Batch of SELEX experiment |
AC |
5 |
6 |
10 |
127 |
2627 |
|
Seed sequence |
ACCGTTARRACCGTTA |
6 |
6 |
7 |
5 |
2622 |
|
Hamming distance of sequences to seed |
2 |
7 |
2069 |
20 |
330 |
92 |
|
SELEX cycle |
3 |
8 |
1194 |
451 |
945 |
179 |
|
Number of repeats |
dimeric |
9 |
1664 |
8 |
639 |
34 |
|
Comment |
|
10 |
2039 |
78 |
281 |
184 |
|
Representative matrix |
yes |
11 |
145 |
1843 |
56 |
34 |
|
|
|
12 |
157 |
1837 |
224 |
85 |
|
|
|
13 |
85 |
3 |
3232 |
1 |
|
|
|
14 |
3 |
27 |
226 |
2605 |
|
Source: |
|
15 |
12 |
29 |
3 |
2629 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
2036 |
86 |
338 |
187 |
|
|
|
|
|
|
|
|
|
|
|
|
MYBL2_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MYBL2 |
1 |
6649 |
2694 |
2932 |
5054 |
|
TF group |
MYB |
2 |
5775 |
3262 |
2294 |
5997 |
|
Polypeptide used |
DBD |
3 |
17329 |
248 |
7613 |
692 |
|
Ligand sequence |
TGAGTG20NGA |
4 |
17329 |
527 |
4589 |
2060 |
|
Batch of SELEX experiment |
AC |
5 |
841 |
17329 |
517 |
167 |
|
Seed sequence |
NNAACCGTTNN |
6 |
601 |
17329 |
0 |
468 |
|
Hamming distance of sequences to seed |
1 |
7 |
1 |
9 |
17329 |
0 |
|
SELEX cycle |
3 |
8 |
411 |
967 |
197 |
17329 |
|
Number of repeats |
monomeric |
9 |
175 |
1479 |
39 |
17329 |
|
Comment |
|
10 |
11455 |
663 |
2131 |
3080 |
|
Representative matrix |
no |
11 |
6970 |
4272 |
2517 |
3569 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
MYBL2_d3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MYBL2 |
1 |
785 |
34 |
447 |
41 |
|
TF group |
MYB |
2 |
1232 |
122 |
722 |
464 |
|
Polypeptide used |
DBD |
3 |
87 |
1232 |
85 |
39 |
|
Ligand sequence |
TGAGTG20NGA |
4 |
107 |
1232 |
190 |
30 |
|
Batch of SELEX experiment |
AC |
5 |
5 |
0 |
1232 |
1 |
|
Seed sequence |
RACCGTTAAACNGYY |
6 |
9 |
6 |
24 |
1232 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
9 |
0 |
1232 |
|
SELEX cycle |
3 |
8 |
1232 |
74 |
77 |
561 |
|
Number of repeats |
dimeric |
9 |
1232 |
31 |
16 |
4 |
|
Comment |
|
10 |
1232 |
38 |
28 |
79 |
|
Representative
matrix |
no |
11 |
14 |
1232 |
6 |
4 |
|
|
|
12 |
57 |
418 |
467 |
289 |
|
|
|
13 |
82 |
123 |
1232 |
95 |
|
Source: |
|
14 |
228 |
466 |
95 |
766 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
40 |
655 |
18 |
577 |
|
|
|