|
MSX2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MSX2 |
1 |
150 |
321 |
741 |
255 |
|
TF group |
homeodomain |
2 |
36 |
813 |
13 |
235 |
|
Polypeptide used |
DBD |
3 |
1090 |
51 |
36 |
40 |
|
Ligand sequence |
TGCGGG20NGA |
4 |
1108 |
34 |
16 |
4 |
|
Batch of SELEX experiment |
W |
5 |
0 |
1 |
0 |
1597 |
|
Seed sequence |
NYAATTAAAANNYAATTA |
6 |
103 |
102 |
4 |
1473 |
|
Hamming distance of sequences to seed |
2 |
7 |
1145 |
6 |
33 |
26 |
|
SELEX cycle |
3 |
8 |
1013 |
114 |
187 |
302 |
|
Number of repeats |
dimeric |
9 |
1000 |
229 |
195 |
192 |
|
Comment |
|
10 |
912 |
153 |
219 |
618 |
|
Representative matrix |
no |
11 |
657 |
89 |
191 |
364 |
|
|
|
12 |
180 |
517 |
465 |
89 |
|
|
|
13 |
82 |
779 |
15 |
260 |
|
|
|
14 |
1086 |
54 |
169 |
9 |
|
|
|
15 |
1091 |
63 |
9 |
1 |
|
|
|
16 |
2 |
1 |
0 |
1495 |
|
Source: |
|
17 |
14 |
45 |
2 |
1472 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
1159 |
6 |
67 |
39 |
|
|
|
|
|
|
|
|
|
|
|
|
MSX2_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MSX2 |
1 |
517 |
1688 |
835 |
360 |
|
TF group |
homeodomain |
2 |
105 |
2592 |
44 |
807 |
|
Polypeptide used |
DBD |
3 |
3400 |
161 |
67 |
84 |
|
Ligand sequence |
TGCGGG20NGA |
4 |
3400 |
28 |
0 |
0 |
|
Batch of SELEX experiment |
W |
5 |
0 |
0 |
0 |
3400 |
|
Seed sequence |
NYAATTAN |
6 |
52 |
169 |
72 |
3400 |
|
Hamming distance of sequences to seed |
1 |
7 |
3400 |
61 |
0 |
21 |
|
SELEX cycle |
3 |
8 |
1198 |
791 |
892 |
518 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |