|
MGA_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MGA |
1 |
30489 |
1151 |
8873 |
4160 |
|
TF group |
TBX |
2 |
4310 |
3737 |
30489 |
1929 |
|
Polypeptide used |
DBD |
3 |
16 |
509 |
30489 |
104 |
|
Ligand sequence |
TAGGGC20NGGT |
4 |
12 |
3534 |
96 |
30489 |
|
Batch of SELEX experiment |
Y |
5 |
14 |
1 |
30489 |
11 |
|
Seed sequence |
AGGTGTGA |
6 |
1042 |
3089 |
381 |
30489 |
|
Hamming distance of sequences to seed |
1 |
7 |
689 |
1753 |
30489 |
6465 |
|
SELEX cycle |
3 |
8 |
30489 |
110 |
920 |
274 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
MGA_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MGA |
1 |
1210 |
11 |
154 |
59 |
|
TF group |
TBX |
2 |
194 |
121 |
1721 |
101 |
|
Polypeptide used |
DBD |
3 |
0 |
13 |
2043 |
1 |
|
Ligand sequence |
TAGGGC20NGGT |
4 |
1 |
198 |
2 |
2022 |
|
Batch of SELEX experiment |
Y |
5 |
1 |
1 |
2100 |
1 |
|
Seed sequence |
AGGTGTKANNTMACACCT |
6 |
80 |
201 |
9 |
1902 |
|
Hamming distance of sequences to seed |
2 |
7 |
54 |
48 |
1402 |
556 |
|
SELEX cycle |
3 |
8 |
1387 |
2 |
14 |
2 |
|
Number of repeats |
dimeric |
9 |
564 |
495 |
167 |
412 |
|
Comment |
|
10 |
492 |
203 |
552 |
528 |
|
Representative matrix |
yes |
11 |
6 |
2 |
0 |
2139 |
|
|
|
12 |
530 |
948 |
18 |
48 |
|
|
|
13 |
1379 |
14 |
97 |
43 |
|
|
|
14 |
0 |
1515 |
0 |
0 |
|
|
|
15 |
1417 |
1 |
90 |
0 |
|
|
|
16 |
1 |
1551 |
11 |
1 |
|
Source: |
|
17 |
26 |
1319 |
210 |
321 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
123 |
323 |
22 |
1751 |
|
|
|
|
|
|
|
|
|
|
|
|
MGA_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MGA |
1 |
995 |
1004 |
2587 |
324 |
|
TF group |
TBX |
2 |
29 |
120 |
3465 |
27 |
|
Polypeptide used |
DBD |
3 |
38 |
859 |
29 |
2623 |
|
Ligand sequence |
TAGGGC20NGGT |
4 |
7 |
2 |
3589 |
0 |
|
Batch of SELEX experiment |
Y |
5 |
348 |
704 |
56 |
3208 |
|
Seed sequence |
GGYGTGANNNNTCACRCC |
6 |
65 |
383 |
3299 |
507 |
|
Hamming distance of sequences to seed |
2 |
7 |
2381 |
4 |
81 |
64 |
|
SELEX cycle |
3 |
8 |
1835 |
186 |
297 |
295 |
|
Number of repeats |
dimeric |
9 |
1622 |
100 |
155 |
816 |
|
Comment |
|
10 |
809 |
141 |
473 |
1711 |
|
Representative matrix |
yes |
11 |
545 |
225 |
424 |
2078 |
|
|
|
12 |
74 |
87 |
22 |
3606 |
|
|
|
13 |
617 |
2364 |
435 |
79 |
|
|
|
14 |
2373 |
8 |
431 |
162 |
|
|
|
15 |
3 |
2627 |
0 |
6 |
|
|
|
16 |
2145 |
63 |
460 |
2 |
|
Source: |
|
17 |
14 |
2681 |
66 |
17 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
117 |
2375 |
726 |
1048 |
|
|
|