|
MEIS3_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MEIS3 |
1 |
1866 |
60 |
1788 |
3451 |
|
TF group |
MEIS |
2 |
465 |
383 |
260 |
7165 |
|
Polypeptide used |
DBD |
3 |
0 |
6 |
7165 |
0 |
|
Ligand sequence |
TGGGTA20NGA |
4 |
7165 |
20 |
455 |
53 |
|
Batch of SELEX experiment |
Y |
5 |
53 |
7165 |
8 |
160 |
|
Seed sequence |
NTGACAGN |
6 |
7165 |
8 |
468 |
145 |
|
Hamming distance of sequences to seed |
1 |
7 |
1690 |
1889 |
7165 |
2094 |
|
SELEX cycle |
2 |
8 |
960 |
2342 |
2888 |
975 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
MEIS3_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MEIS3 |
1 |
311 |
218 |
152 |
3455 |
|
TF group |
MEIS |
2 |
52 |
194 |
3995 |
45 |
|
Polypeptide used |
DBD |
3 |
3286 |
42 |
242 |
315 |
|
Ligand sequence |
TGGGTA20NGA |
4 |
65 |
3664 |
40 |
84 |
|
Batch of SELEX experiment |
Y |
5 |
3533 |
13 |
112 |
29 |
|
Seed sequence |
TGACAGSTGTCA |
6 |
214 |
62 |
3609 |
822 |
|
Hamming distance of sequences to seed |
2 |
7 |
192 |
1018 |
1952 |
52 |
|
SELEX cycle |
2 |
8 |
24 |
109 |
14 |
3683 |
|
Number of repeats |
dimeric |
9 |
132 |
78 |
3995 |
144 |
|
Comment |
|
10 |
776 |
292 |
89 |
3165 |
|
Representative
matrix |
no |
11 |
73 |
3604 |
430 |
115 |
|
Source: |
|
12 |
3329 |
176 |
328 |
336 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Meis3_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Meis3 |
1 |
1199 |
1028 |
844 |
1829 |
|
TF group |
MEIS |
2 |
455 |
539 |
478 |
4901 |
|
Polypeptide used |
DBD |
3 |
0 |
0 |
4901 |
0 |
|
Ligand sequence |
TGGACA20NGA |
4 |
4901 |
450 |
40 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
0 |
4901 |
44 |
0 |
|
Seed sequence |
NTGACAN |
6 |
4901 |
0 |
682 |
76 |
|
Hamming distance of sequences to seed |
1 |
7 |
814 |
881 |
2421 |
785 |
|
SELEX cycle |
2 |
|
|
|
|
|
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Meis3_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Meis3 |
1 |
614 |
390 |
81 |
14126 |
|
TF group |
MEIS |
2 |
50 |
1187 |
16547 |
29 |
|
Polypeptide used |
DBD |
3 |
14038 |
79 |
426 |
902 |
|
Ligand sequence |
TGGACA20NGA |
4 |
74 |
15352 |
469 |
269 |
|
Batch of SELEX experiment |
AF |
5 |
14405 |
29 |
159 |
27 |
|
Seed sequence |
TGACAGSTGTCA |
6 |
1309 |
94 |
15042 |
2491 |
|
Hamming distance of sequences to seed |
2 |
7 |
356 |
4998 |
6583 |
208 |
|
SELEX cycle |
3 |
8 |
50 |
168 |
92 |
14623 |
|
Number of repeats |
dimeric |
9 |
254 |
123 |
16158 |
466 |
|
Comment |
|
10 |
1288 |
568 |
182 |
13589 |
|
Representative
matrix |
no |
11 |
53 |
15029 |
1451 |
231 |
|
Source: |
|
12 |
13506 |
345 |
853 |
649 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |