|
Lhx8_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Lhx8 |
1 |
153 |
469 |
196 |
291 |
|
TF group |
homeodomain |
2 |
114 |
517 |
39 |
1109 |
|
Polypeptide used |
DBD |
3 |
1109 |
100 |
474 |
28 |
|
Ligand sequence |
TGCTCG40NCTC |
4 |
1109 |
20 |
20 |
3 |
|
Batch of SELEX experiment |
AI |
5 |
21 |
25 |
18 |
1109 |
|
Seed sequence |
NTAATTANNNNTAATTAN |
6 |
40 |
613 |
172 |
1109 |
|
Hamming distance of sequences to seed |
1 |
7 |
1109 |
34 |
330 |
75 |
|
SELEX cycle |
3 |
8 |
360 |
243 |
403 |
103 |
|
Number of repeats |
dimeric |
9 |
176 |
468 |
237 |
228 |
|
Comment |
|
10 |
307 |
295 |
361 |
147 |
|
Representative
matrix |
no |
11 |
137 |
527 |
190 |
255 |
|
|
|
12 |
101 |
466 |
44 |
1109 |
|
|
|
13 |
1109 |
103 |
519 |
48 |
|
|
|
14 |
1109 |
2 |
15 |
2 |
|
|
|
15 |
14 |
32 |
21 |
1109 |
|
|
|
16 |
38 |
665 |
148 |
1109 |
|
Source: |
|
17 |
1109 |
30 |
391 |
68 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
365 |
278 |
355 |
111 |
|
|
|
|
|
|
|
|
|
|
|
|
Lhx8_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Lhx8 |
1 |
472 |
2588 |
925 |
1108 |
|
TF group |
homeodomain |
2 |
0 |
1996 |
0 |
5092 |
|
Polypeptide used |
DBD |
3 |
5092 |
160 |
1670 |
0 |
|
Ligand sequence |
TGCTCG40NCTC |
4 |
5092 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AI |
5 |
0 |
0 |
0 |
5092 |
|
Seed sequence |
NTAATTAN |
6 |
0 |
2083 |
88 |
5092 |
|
Hamming distance of sequences to seed |
1 |
7 |
5092 |
0 |
1929 |
0 |
|
SELEX cycle |
3 |
8 |
1366 |
1156 |
2156 |
414 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Lhx8_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Lhx8 |
1 |
387 |
191 |
71 |
7071 |
|
TF group |
homeodomain |
2 |
3840 |
34 |
3231 |
50 |
|
Polypeptide used |
DBD |
3 |
7071 |
18 |
47 |
16 |
|
Ligand sequence |
TGCTCG40NCTC |
4 |
112 |
71 |
109 |
7071 |
|
Batch of SELEX experiment |
AI |
5 |
120 |
55 |
114 |
7071 |
|
Seed sequence |
TRATTGCAATYA |
6 |
892 |
70 |
7071 |
36 |
|
Hamming distance of sequences to seed |
1 |
7 |
67 |
7071 |
45 |
618 |
|
SELEX cycle |
3 |
8 |
7071 |
96 |
57 |
61 |
|
Number of repeats |
dimeric |
9 |
7071 |
98 |
39 |
57 |
|
Comment |
|
10 |
24 |
59 |
24 |
7071 |
|
Representative
matrix |
no |
11 |
68 |
3698 |
42 |
3373 |
|
Source: |
|
12 |
7071 |
93 |
132 |
295 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |