|
LHX9_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
LHX9 |
1 |
283 |
569 |
299 |
349 |
|
TF group |
homeodomain |
2 |
125 |
779 |
0 |
720 |
|
Polypeptide used |
DBD |
3 |
1500 |
290 |
93 |
142 |
|
Ligand sequence |
TATTGT20NGTG |
4 |
1500 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
Y |
5 |
0 |
0 |
0 |
1500 |
|
Seed sequence |
NYAATTAN |
6 |
71 |
131 |
300 |
1500 |
|
Hamming distance of sequences to seed |
1 |
7 |
1500 |
28 |
113 |
72 |
|
SELEX cycle |
2 |
8 |
558 |
221 |
529 |
191 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
LHX9_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
LHX9 |
1 |
42 |
9 |
6 |
730 |
|
TF group |
homeodomain |
2 |
730 |
5 |
21 |
29 |
|
Polypeptide used |
DBD |
3 |
730 |
14 |
21 |
14 |
|
Ligand sequence |
TATTGT20NGTG |
4 |
22 |
67 |
60 |
730 |
|
Batch of SELEX experiment |
Y |
5 |
143 |
86 |
192 |
730 |
|
Seed sequence |
TAATTRCYAATTA |
6 |
214 |
6 |
516 |
11 |
|
Hamming distance of sequences to seed |
1 |
7 |
147 |
730 |
0 |
76 |
|
SELEX cycle |
3 |
8 |
11 |
379 |
3 |
351 |
|
Number of repeats |
dimeric |
9 |
730 |
171 |
21 |
107 |
|
Comment |
|
10 |
730 |
26 |
25 |
12 |
|
Representative matrix |
yes |
11 |
0 |
14 |
3 |
730 |
|
|
|
12 |
10 |
26 |
6 |
730 |
|
Source: |
|
13 |
730 |
4 |
21 |
34 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |