|
LHX6_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
LHX6 |
1 |
1857 |
769 |
1548 |
264 |
|
TF group |
homeodomain |
2 |
529 |
3015 |
791 |
1422 |
|
Polypeptide used |
full |
3 |
0 |
253 |
28 |
4438 |
|
Ligand sequence |
TCGGGG20NGGT |
4 |
4438 |
90 |
487 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
4438 |
14 |
0 |
0 |
|
Seed sequence |
NYTAATTARN |
6 |
0 |
98 |
15 |
4438 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
766 |
108 |
4438 |
|
SELEX cycle |
4 |
8 |
4438 |
0 |
243 |
2 |
|
Number of repeats |
monomeric |
9 |
1668 |
637 |
2769 |
194 |
|
Comment |
|
10 |
548 |
1654 |
728 |
1507 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
LHX6_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
LHX6 |
1 |
15 |
469 |
5 |
2675 |
|
TF group |
homeodomain |
2 |
2564 |
68 |
408 |
22 |
|
Polypeptide used |
full |
3 |
2661 |
5 |
5 |
5 |
|
Ligand sequence |
TCGGGG20NGGT |
4 |
0 |
3 |
21 |
2986 |
|
Batch of SELEX experiment |
AF |
5 |
0 |
151 |
29 |
2910 |
|
Seed sequence |
TAATTAGYRYTRATTA |
6 |
2692 |
4 |
216 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
264 |
452 |
3382 |
157 |
|
SELEX cycle |
4 |
8 |
236 |
1755 |
343 |
1377 |
|
Number of repeats |
dimeric |
9 |
933 |
401 |
2213 |
84 |
|
Comment |
|
10 |
57 |
1591 |
277 |
1461 |
|
Representative matrix |
yes |
11 |
1 |
40 |
6 |
2923 |
|
|
|
12 |
1571 |
19 |
1442 |
11 |
|
|
|
13 |
2760 |
23 |
3 |
0 |
|
|
|
14 |
0 |
54 |
5 |
2874 |
|
Source: |
|
15 |
15 |
147 |
122 |
2766 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
2167 |
11 |
844 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
LHX6_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
LHX6 |
1 |
25 |
36 |
21 |
2024 |
|
TF group |
homeodomain |
2 |
578 |
14 |
1503 |
7 |
|
Polypeptide used |
full |
3 |
1368 |
43 |
78 |
0 |
|
Ligand sequence |
TCGGGG20NGGT |
4 |
0 |
55 |
62 |
2101 |
|
Batch of SELEX experiment |
AF |
5 |
0 |
54 |
79 |
2063 |
|
Seed sequence |
YRATTGCAATYR |
6 |
33 |
27 |
2595 |
9 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
2104 |
23 |
128 |
|
SELEX cycle |
4 |
8 |
1414 |
41 |
70 |
0 |
|
Number of repeats |
dimeric |
9 |
1418 |
65 |
124 |
10 |
|
Comment |
|
10 |
0 |
98 |
0 |
2023 |
|
Representative matrix |
yes |
11 |
0 |
1200 |
31 |
879 |
|
Source: |
|
12 |
1390 |
25 |
12 |
10 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |